SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene17757

Length: 1021 nt

Origin of reads: Inia v1 Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene17757

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glyceraldehyde-3-phosphate dehydrogenase [Marchantia polymorpha]	-	-	7.00649e-45	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Blast2go	glyceraldehyde-3-phosphate dehydrogenase	-	-	0.0	71%

Source	GOs	Term	Type	Identity
Blast2go	response to sucrose stimulus	GO:0009744	Biological Process	71%
Blast2go	response to light stimulus	GO:0009416	Biological Process	71%
Blast2go	response to cold	GO:0009409	Biological Process	71%
Blast2go	metabolic process	GO:0008152	Biological Process	71%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	71%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	71%
Blast2go	protein binding	GO:0005515	Molecular Function	71%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	71%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	71%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	71%
Blast2go	stromule	GO:0010319	Cellular Component	71%
Blast2go	apoplast	GO:0048046	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	Domain of unknown function CP12	IPR003823	-	-
Sma3	Glyceraldehyde-3-phosphate dehydrogenase, type I	IPR006424	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRY6

Fln msg: your sequence is shorter than subject: 206 - 471

Fln protein: EFGGIVKGTVSATLSYTSDQSLVDAIHCDRRRARAAALNIVPTSIDISINTLSRVLPSTVNLKGRFNGIAMRVPTPNVSVVDLVVNVVNKNFTVDDVKKAFKKAASDGPLHGILAVCDEHLVSTDFLGSHASATVDNTLTMVMGDDMIKVVAWFDNEWAYSQRVVEFAHTVHAKYAAAHGEVLIREEEQMCRVDTEHIECKIHDV*

Protein Length: 207

Fln nts: GAGTTCGGTGGCATAGTGAAAGGGACTGTCTCCGCAACACTTTCATATACCAGTGATCAGAGTCTGGTGGATGCAATACACTGTGACAGGAGAAGAGCAAGAGCGGCGGCGCTAAACATAGTTCCAACGAGCATCGATATATCTATTAATACACTATCTCGAGTGCTGCCCAGCACTGTGAATCTCAAGGGCAGGTTCAACGGCATTGCTATGCGCGTGCCCACCCCCAACGTGTCGGTGGTTGACTTGGTGGTCAACGTGGTGAATAAGAACTTCACGGTAGATGATGTGAAGAAAGCCTTCAAGAAGGCTGCTTCCGATGGACCCCTCCATGGTATTCTTGCAGTGTGTGACGAACACTTGGTGTCCACGGACTTTCTCGGTTCCCATGCTTCGGCCACTGTAGATAACACACTCACCATGGTCATGGGAGACGACATGATTAAAGTGGTCGCTTGGTTCGACAATGAATGGGCTTACAGCCAAAGAGTTGTAGAGTTCGCGCACACGGTGCACGCAAAATATGCAGCGGCCCACGGCGAAGTTCTCATTCGTGAGGAAGAGCAAATGTGCAGGGTCGATACAGAGCACATTGAATGCAAAATACACGACGTTTGA___ATTTAATTAGCGTTTCCTACACCCCTTCCCTCATCCCTACTTTAATGGCGCTTCCGTACTCGTTTAATCAATGGAGTTTCTTCTTTTATGTGCTTTTCTGTTGTTTTGGTTTGATGTTAAAGAGGTTTCATGTAATGCTCCTTCCAATTCTTGTTGTTAAGGCTGAGCTTCCGTCAGTACCCTGCAGGATAATGGATCAAGGGGTTATTAAAAGGGTAACGCAATGGAGCTGTTTTATTATTATATTTGAAGCTCCAGCTTGATCGGGTTTTATATATTTAAGCTGTTAGAATGATCCCTTTGAGGTTTTTAGACAGGCCACAAGTTACGTGTGAGTCAAAAGATATGTGTGATGTATCGTAATAATATTTCCTTCGTCAATAATAAAATTGTTATTTTATAC

Fln Alignment:

Contig17757___EFGGIVKGTVSATLSYTSDQSLVDAIHCDRRRARAAALNIVPTSIDISINTLSRVLPSTVNLKGRFNGIAMRVPTPXXXXXXXXXXXXXXXFTVDDVXXXXXXXXSDGPLHGILAVCDEHLVSTDFLGSHASATVDNTLTMVMGDDMIKVVAWFDNEWAYSQRVVEFAHTVHAKYAAAHG---EVLIREEEQMCRVDTEHIECKIHD
B8LRY6_______________EFDGILKGTVTSTLSYTTDQSLLDAIHCDKRRARAAALNIVPASTDIS-NTISLVLP---NLKDKLNGIAMRVPTPTVSMVDLVVHVGKKGITVEDVKKVFKTAAANESLRGILAVCDEPLVSMDFRGSFASVTVDTTLTMVVGEDMIKVVAWYDNEWAYSQRVVDLAHTVQARWELAMGGSASAALEYEQSICRVDSENIECKIHD

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
620		20		80	0.999996
629		12		87	0.992554
667	21	78			1.0
672	21	78			1.0
674		21	78		1.0
692	21		78		1.0
711	33	66			1.0
713			37	62	1.0
784	40		60		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain