SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene17729

Length: 1083 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene17729

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Expansin n=6 Tax=Pinaceae RepID=Q9SWY1_PINTA	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	58%
Blast2go	alpha-expansin 2	-	-	92%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Expansin	IPR002963	-	-
Sma3		IPR005132	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Expansin/pollen allergen, DPBB domain	IPR007112	-	-
Sma3	Pollen allergen/expansin, C-terminal	IPR007117	-	-
Sma3	Expansin/Lol pI	IPR007118	-	-
Sma3		IPR014734	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LN89

Fln msg: Overlapping hits, possible frame ERROR between 135 and 114, atg_distance in limit (1-15): atg_distance = 12, your sequence is shorter than subject: 235 - 253

Fln protein: MMVAQAYGYGGWQSGHATFYGGSDASGTxxxxxxxxxLYSQGYGTNTAALSTVLFNNGLTCGACYEMKCNDDPQWCLPGTVRITATNFCPPNYALPNNNGGWCNPPLQHFDMAEPAYLKIAKYRSGIVPIAYRRVPCLTKGGIRFTINGHSYFNLVLITNVGGAGDVHGVWIKGSRTGWQVMSRNWGQNWQSNSYLNGQSLCFKVTTSDGRTTVSYNVAPSNWQFGQTFEGREI*

Protein Length: 236

Fln nts: AATGTTTCAGTGCTTTGTTTCTGCTGG_-_ATGATGGTTGCTCAAGCTTATGGATACGGTGGCTGGCAATCTGGCCATGCCACGTTTTACGGTGGCAGCGATGCTTCCGGAACTxxxxxxxxxxxxxxxxxxxxxxxxxxxCTGTACAGCCAAGGTTATGGCACTAATACTGCTGCTTTGAGTACTGTGCTTTTCAACAATGGACTGACCTGCGGAGCCTGCTACGAAATGAAATGTAACGACGATCCGCAGTGGTGTTTGCCTGGGACTGTCAGGATCACAGCTACTAACTTCTGCCCGCCAAATTATGCTCTCCCCAACAACAATGGTGGCTGGTGCAACCCACCCCTGCAACATTTCGATATGGCCGAACCTGCTTATCTGAAAATTGCCAAATATAGAAGCGGGATTGTTCCCATCGCCTACCGAAGGGTTCCCTGCCTGACAAAGGGAGGAATCCGATTTACAATAAATGGCCATTCATACTTCAACCTGGTGCTCATCACCAACGTGGGAGGAGCAGGGGACGTCCATGGCGTTTGGATAAAAGGGTCAAGAACTGGTTGGCAGGTAATGTCACGCAACTGGGGACAGAATTGGCAAAGCAACTCCTACCTCAACGGCCAGAGCCTTTGCTTCAAGGTCACCACCAGTGATGGCAGGACAACTGTTTCGTATAACGTCGCTCCTTCTAACTGGCAATTTGGCCAGACTTTCGAAGGCAGGGAAATTTAA___CACGAGAAATCAGAGAGAAACGAGATGGTAACGAATGTTGCCGCATATTTACCATTTATTCGAGTTGACGAGGTTGCTTTATCAGTATTGGCACCCGCTCCTCTTCACTATGCCATTTATTTTAGCCAAAGTGTTTGAAGTATTCGCTTTTACGTATACAATAGATTAGATTAGGGAAGGTTCCTACGCCGCATGCTAGAGGTAAATATATGGGCGAATATCCAACTAGGAACAGAATCAATATGAATAAATCTACAACAGTACTGTGTGCCAAAGGCACGCTTGTCCCGAGATCTGTTGAATAATATATTCAGACTCCAAAACGTTGTACGCAATGGAATTGTCAGTTCTT

Fln Alignment:

Contig17729___SVLCFCWMMVAQAYGYGGWQSGHATFYGGSDASGTMxxxxxxxNLYSQGYGTNTAALSTVLFNNGLTCGACYEMKCNDDPQWCLPGTVRITATNFCPPNYALPNNNGGWCNPPLQHFDMAEPAYLKIAKYRSGIVPIAYRRVPCLTKGGIRFTINGHSYFNLVLITNVGGAGDVHGVWIKGSRTGWQVMSRNWGQNWQSNSYLNGQSLCFKVTTSDGRTTVSYNVAPSNWQFGQTFEGREI
B8LN89_______________SLLTIIWLITG-AHGYGDWESAHATFYGGSDASGTMxxxxxxxNLYSQGYGTNTAALSTALFNDGLSCGACYEMQCNDDPQWCLPGTIMVTATNFCPPNNALPNNDGGWCNPPLQHFDMAEPSYLKIAKYRSGIVPILYRRVPCLRKGGIRFTVNGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTVVSYNAAPSNWQFGQTFEGGQL

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
720		87	12		0.992554
721	85	14			0.993533
724	14		85		0.993533
736		14	85		0.993533
760			83	16	0.994512
796		16	83		0.994512
860	28		57		1.0
978	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain