SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene17727

Length: 711 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene17727

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gibberellin-regulated protein 3, putative n=1 Tax=Ricinus communis RepID=B9S2K0_RICCO	-	-	2.0e-25	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Blast2go	gonadotropin beta chain	-	-	7.59387e-32	74%

Source	InterPros	Term	Type	Identity
Sma3	Gibberellin regulated protein	IPR003854	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Glycine rich protein	IPR010800	-	-
Sma3	Gonadotropin, beta subunit, conserved site	IPR018245	-	-

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
132		10	90		0.90298
185		11		88	0.923564
270		88		11	0.999952
489	73	26			1.0
520		62		37	1.0
530	62	37			1.0
548		28		71	1.0
576		16		83	0.994512
636	85			14	0.993533
657			14	85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain