SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene17723

Length: 1579 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene17723

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	hydrolase-like [Oryza sativa Japonica Group] gb\|EAY75096.1\| hypothetical protein OsI_02990 [Oryza sativa Indica Group] dbj\|BAH00883.1\| unnamed protein product [Oryza sativa Japonica Group]	-	-	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	epoxide hydrolase	-	-	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NX89

Fln msg:

Fln protein: MRGIFGFSIVEFFRKWKRSRWTSLGLKSEQIQLNNGTSLHCWVLQKNDQHSLKNRRPSLLLVHGFGADSLTGWDTQICALGKRFDLFIPDLIFFGDSTTTSSERTEIFQAECLKSMLQHFGVESVIVVGHSYGGFVAFWMAHKYPNLVRRLVIVSSGICMAPSTNDPLLEEFGSSDIEDLLIPKNVRDLKKVANFSFYRMPWLPSFIYKDLLQTVERNKEQKAELLHATVIGSKSLQALPSLNQDVLIVWGQKDRIFRLEEAYALQKHIGEKGKLVVIKECGHVLPLEKPSELNKQILEFVQLED*

Protein Length: 307

Fln nts: AGTATCACGGTCGACTGTCAAATCCATTATCGGTTCCGACTGAGCAAAAGCATAACCAGGCTACCCCACCCTAGTTAACCTTCCTTACTTTAAGCGATATCCATTCTCGCCACAACATTCATTACACCACGCTTCGATATCGAGCAGACAAGATCGATCCGCAGTTGAA_-_ATGAGGGGAATCTTTGGATTCAGTATTGTAGAATTCTTCAGAAAGTGGAAGAGATCTCGATGGACCTCGCTCGGCTTAAAGTCGGAGCAGATACAGTTGAACAATGGGACCTCACTGCACTGCTGGGTTTTACAGAAGAACGATCAACACAGCTTGAAGAATCGCAGGCCATCTCTCCTTTTAGTTCACGGTTTCGGCGCAGACAGCCTAACGGGATGGGATACCCAGATCTGCGCTCTCGGCAAGCGCTTCGATCTCTTCATCCCGGATCTCATTTTCTTCGGCGACTCCACAACCACAAGCTCTGAGCGCACTGAGATTTTCCAGGCAGAGTGTCTCAAAAGTATGCTCCAACATTTCGGAGTGGAGAGCGTGATCGTGGTGGGGCATAGCTACGGTGGCTTCGTTGCCTTCTGGATGGCGCACAAATACCCTAACCTTGTTCGTCGCCTGGTTATTGTGAGCTCTGGAATTTGCATGGCGCCATCGACAAACGACCCTCTTCTCGAAGAATTCGGTTCTTCTGACATTGAGGACTTACTTATTCCCAAGAATGTTAGAGACCTGAAGAAAGTTGCAAATTTTAGCTTTTACAGGATGCCATGGCTTCCATCTTTCATATACAAGGACTTATTGCAGACTGTGGAAAGAAACAAAGAGCAGAAGGCAGAGCTTTTGCATGCAACTGTGATTGGTTCAAAGAGTTTGCAGGCACTCCCTTCGCTAAACCAGGATGTTCTAATAGTGTGGGGGCAAAAGGATAGAATATTCAGGCTGGAAGAGGCCTATGCTCTACAAAAGCATATTGGAGAGAAGGGTAAGCTTGTGGTGATAAAGGAGTGTGGGCATGTTCTACCTCTGGAGAAACCCTCCGAGTTGAACAAGCAGATCTTGGAGTTTGTACAGTTGGAAGATTAA___ATGAAGAGAATGGAGCCACAGAAAATGATGTGTTTCTTCGGTTGGACAATTAAACGAAGACGGTGGAGCCACCGAAAATGAATGGTACGAGGACAAACGAGTCTCACTGTCACGATATTGCTCTAAAAATAGAATAAATGTGACATACAGCCCAGGTTCAACACCTGGATAATTATAGTAATGTTTAGCACTGTATTTCGCTTTACTCTATGGAAAATTGCATGTGATCAAGCTTATTTAATAATTTATTCTTATTCATGTACAGCTGGGTTTGAAACACATTATAGTATACTGATACAATTTGATTGGGTTGTTTTATTTTAATATGATTTCTCATGGCTGTATTTATTAGCTGTTTTATGATTAGGACTGGAGTTTATATTGATACCAACCTTATGTATGTAAATTATTGGTTCTTTAAATTATTGTGGCAGTGTAAAGCATTAATACATTATACACTGTAGTGTAGTGTCAGCACACTACCTTTAAAGT

Fln Alignment:

Contig17723___MRGIFGFSIVEFFRKWKRSRWTSLGLKSEQIQLNNGTSLHCWVLQKNDQHSLKNRRPSLLLVHGFGADSLTGWDTQICALGKRFDLFIPDLIFFGDSTTTSSERTEIFQAECLKSMLQHFGVESVIVVGHSYGGFVAFWMAHKYPNLVRRLVIVSSGICMAPSTNDPLLEEFGSSDIEDLLIPKNVRDLKKVANFSFYRMPWLPSFIYKDLLQTVERNKEQKAELLHATVIGSKSLQALPSLNQDVLIVWGQKDRIFRLEEAYALQKHIGEKGKLVVIKECGHVLPLEKPSELNKQILEFVQLED
A9NX89_______________MRGLFGFSIIEFVRKRKRAQWISLGLRSKQIQLNNGTSLHCWVLQKNEPDSLENPRPSLLLVHGFGADGLTGWDTQICALGKHFDLLIPDLIFFGDSTTTSSERTEIFQAECLKSMLDTLGVESVIVVGHSYGGFVAFWMAHKYPNVVRRLVIVSSGICMTPSTNDPLLEEFGSSDIEDLLLPKNVGDFKRVANFSFYKMPWLPSFIYKDLLQAVERNREQKAELLHATVIGSKNSQALPSVNQDVLIVWGEKDRIFRLEEAYVLQKHIGEKGKLVVIKDCGHVLPVEKPTKLNQTILKFLQLDN

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1121	20		80		0.999996
1127	11			88	0.923564
1143	85		14		0.993533
1250	75			25	0.996473
1272		25		75	0.996473
1273			75	25	0.996473
1327			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain