SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene17713

Length: 3120 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene17713
CGTCGTGACCTTGGCTGTCACTCAGTTACTCCACTTTTTTGTGACCGCTTATTTTCGCAAACGGTACTGAAGAACCTTACATTGCCTGTGGCTGCCTTTTTTGACAACAGGGACAGAAGAACCTTACACATTGCGAGTGCACAAAGGCGAAAGCAAAAAGCAAGGGGCATTTCTTTGTGTGTGTATATATATAACTTTACCATTTCAGGCTTCTTGGTAGCAATGGCTTCTGCACTTCTTCTGCTATGATACTTGGCTCCTGGTTTTTTCTCTGTAATTCATTAACTTGCAGGCCAAGGCTAATTTATCCCCTCAAATTAAAAACCCCAGAGAAGTGTCTCGGCAATTTCCTGGAAAGCACTCAGAGCTTTTTTCATATGAATTATCTTGCATTCGCTGCGCCAATTCGTGCCATGCCATCCATTTCGTTAATATCGTAATCTTTTTCGCGACCTGCTTGCAGTCGCTTCTATTGCGGATCTAAAAAGCGACTGTTGAATTAATATTAAATCGGGGGAGTTTGAAATAGAGGAGGGTCTGGTCTCTATGAGACTGCTGGTAAGGGGGATGCGGAGAAGTGAAGCAGTGACGTGCCATAGAGAAGTAGAAGACTTGCAGGGTTACGAAGATAAACTCGTAGGCCGTGGCATTGGCATCAATGCGCCTAAAGTAAGGACGAGAGATAAAAGGTTCATGCCTTCTAGTGGTATCTGAAACTGGTGGCTCCTGGGTAGTGTGGCGGTGTGGTTCAGCTGGGCGGTGGCGGTGGCCGAGCTGTTTGTGGTATCATTTTTGTTGGACTTCTTATATTTTTCACAAAATGACTCGAATTCTGGTGCAGCGGGGCAGCAGTGGTTCATCATCGAACCCTTCGCAGACTCGTTCACATGCGGCAGCATCAGCGGCGGCAGCTGCTTCTTCATCTTCTGCAGGGCCTCTTTCGCTGCCACCTTCCGAATCCTTAGCATCTAAGGCCTCTCTCTCCTCCTTTTCCTTTGAAGAAGAAGAACAAAATTACGAGGATCTTAATGAACCTGGAATTGATCAAGAGATTCCTGAAACTAACAACAATGCAGATACCAAATCTTGTGAACTTGATGATGTCCCAAAGGAAGTTAGACCATGTGAAACTGATTCTCTAGAAGATGGGCACATTGCATTCCTATTGAATTCGCTTCATCTGACAGCAGATAGGACTAATAGTGCTGTTGGCAAGCTGGAACAAGGACAAATTAGTGTTGATTTGTCTGGAATTACAGCCTCAATTGACGGTAACGTTGCGAATTCGGGTTTTAAACCGGAGCTGGCTAGTGTGGAATTGGGTGTATATGACACTTCAGAGAAACCTGTTATAGAAGAAGATAATAGCCATAATCAGTTCGGTGTCGGTGTATTAGGCTTGTCGCATATGGGCTATTCATGCCCGCCTCCCCCTCCACTTCCTCCATCAAAACCCATGGCCAGTTCAACTGCAAGAAGAGTTGGGTCATGTGTGTCAAGCACACAACGAAGTGGGTCTTCTAGAAGAAATTCACGGGCCACCATGGCATCAAGGTCCTCACCTACTGGTTCACACCCTTCATCACCGAGGTCACATGGAGATGGAGAAGGTTATAATAGTGCAGATGAACAAAGTCCCTGTTTCGGCTCTTATGATGATGCTGAAAGAGAACGGCAGTTTGAAATTGAAATTCGACGGTCAAAGGGGCTTGAAGTGAGGCGCATGATAGCAGATGGTAATTGCCTTTTTCGTGCAGTCGCTGATCAGGTTTATGGTGACCCAGAGGTGTATGATGTCACAAGACAGATGTGCATTGACTACATGGAGAAAGAGAGAGATCACTTCTCTCAATTTGTCACAGAAAGCTTCACAGCTTATTCCAAGAGAAAAAGGAGAGACAAGGTCTATGGTAATAATTTGGAAATCCAGGCAATGTCGGAGATATATAATCGTCCCATTCATATTTATTCATACAGCACAGAGCCTATCAACATATTTCATGGTAGTTATGGTACCGATTCTCCTCCTATACGGCTTAGCTATCATCGTGGAAACCACTACAATTCTCTTGTTGATCCACACAGATTGACAATTGGTGCTGGCCTCGGCTTTAGTAGTCTTCAAGGGAAAAATATAGACAAGGATCAAGTGAAAGCTGCTATAAAAGCACAGCAGGATCAGCAAATTGAAAATGCACTTTTAGCTGAGGGCCGCTTCTACTCTGATTTGGAGTTAACAGAGAAAGAAATTGAACGCATGGTGATGGAAGCCTCACGGGCTGAATATCTTGCCCAAGATAAATACAGACAACAATTCGGTTACAGAGAATCTTCCACTTCTGGTGCTGAGCCATCATCCTCAGCGACAGGAACATCCCGAAATGAAGTTAGCACATGGCATGGGGATTTTAAAGTGGTCGAAGACACTGCACTGTCAAGGAGTATCCACACGGTTCTGTCTATGGGCTTTAGCCCTGCGAGGGTGATAGAGGCGCACAGCATCTTTGGTGATGATGTAGAGTCCATGGTGTGTTATCTTCTGGAGACTGGGACAAGTAGTCCTGGAGGGGAAAGCATATACAGGATGAAAGGAAAAGCTGCAGAGAAATGAAACATAGTGCATAAGCATATCTTGCCAGAGCCTAATTCTGGATGCAGTAGAATTCTTTTCCGGTTATGATACTATTTTTGGTCTCAATGCATTATATTTCAATTTTGAACCTAGCAATCTATCTAAATCTAGAATAGTAAAATTATGTGGGCCAGTGTCATCCTACGTACCTCATTCTATTGGAAAATTTGTACACAAGTATATTTTAGTATATAATATAAACAAACATGGAGGTCATTTGAAGTGACAGTTCGCAATCACTCACGTTGTTATATAAATTAAAATCGAAGTCTAGACTGCAAAGAAGATTTGCATGCCTGTGGCCATGCTTATACATGGTTCTGGTCTAATAAATACCTAGCAGTGATTTGTCTGTCCTCTTGCCATCCTGAATAGAACAGTGCTTAAATGCCTTAATGTGCCTCTTTCAGTGGGACCTAGGGTTATGTAAAACTTGATGTTAGTTTCAGCACGTGATGAATACAAGACATGATTTTACTTGTGAATAC

Ace file of the UniGene sp_v2.0_unigene17713 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	OTU-like cysteine type protease [Arabidopsis thaliana] ref\|NP_850099.1\| OTU-like cysteine type protease [Arabidopsis thaliana] gb\|AAL24173.1\| At2g27350/F12K2.7 [Arabidopsis thaliana] gb\|AAD41995.2\| expressed protein [Arabidopsis thaliana] gb\|AAO00839.1\| e	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	30%
Blast2go	otu-like cysteine type protease	-	-	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ovarian tumour, otubain	IPR003323	-	0.0	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMJ1

Fln msg: your sequence is longer than subject: 597 - 411

Fln protein: MTRILVQRGSSGSSSNPSQTRSHAAASAAAAASSSSAGPLSLPPSESLASKASLSSFSFEEEEQNYEDLNEPGIDQEIPETNNNADTKSCELDDVPKEVRPCETDSLEDGHIAFLLNSLHLTADRTNSAVGKLEQGQISVDLSGITASIDGNVANSGFKPELASVELGVYDTSEKPVIEEDNSHNQFGVGVLGLSHMGYSCPPPPPLPPSKPMASSTARRVGSCVSSTQRSGSSRRNSRATMASRSSPTGSHPSSPRSHGDGEGYNSADEQSPCFGSYDDAERERQFEIEIRRSKGLEVRRMIADGNCLFRAVADQVYGDPEVYDVTRQMCIDYMEKERDHFSQFVTESFTAYSKRKRRDKVYGNNLEIQAMSEIYNRPIHIYSYSTEPINIFHGSYGTDSPPIRLSYHRGNHYNSLVDPHRLTIGAGLGFSSLQGKNIDKDQVKAAIKAQQDQQIENALLAEGRFYSDLELTEKEIERMVMEASRAEYLAQDKYRQQFGYRESSTSGAEPSSSATGTSRNEVSTWHGDFKVVEDTALSRSIHTVLSMGFSPARVIEAHSIFGDDVESMVCYLLETGTSSPGGESIYRMKGKAAEK*

Protein Length: 598

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTACTCCACTTTTTTGTGACCGCTTATTTTCGCAAACGGTACTGAAGAACCTTACATTGCCTGTGGCTGCCTTTTTTGACAACAGGGACAGAAGAACCTTACACATTGCGAGTGCACAAAGGCGAAAGCAAAAAGCAAGGGGCATTTCTTTGTGTGTGTATATATATAACTTTACCATTTCAGGCTTCTTGGTAGCAATGGCTTCTGCACTTCTTCTGCTATGATACTTGGCTCCTGGTTTTTTCTCTGTAATTCATTAACTTGCAGGCCAAGGCTAATTTATCCCCTCAAATTAAAAACCCCAGAGAAGTGTCTCGGCAATTTCCTGGAAAGCACTCAGAGCTTTTTTCATATGAATTATCTTGCATTCGCTGCGCCAATTCGTGCCATGCCATCCATTTCGTTAATATCGTAATCTTTTTCGCGACCTGCTTGCAGTCGCTTCTATTGCGGATCTAAAAAGCGACTGTTGAATTAATATTAAATCGGGGGAGTTTGAAATAGAGGAGGGTCTGGTCTCTATGAGACTGCTGGTAAGGGGGATGCGGAGAAGTGAAGCAGTGACGTGCCATAGAGAAGTAGAAGACTTGCAGGGTTACGAAGATAAACTCGTAGGCCGTGGCATTGGCATCAATGCGCCTAAAGTAAGGACGAGAGATAAAAGGTTCATGCCTTCTAGTGGTATCTGAAACTGGTGGCTCCTGGGTAGTGTGGCGGTGTGGTTCAGCTGGGCGGTGGCGGTGGCCGAGCTGTTTGTGGTATCATTTTTGTTGGACTTCTTATATTTTTCACAAA_-_ATGACTCGAATTCTGGTGCAGCGGGGCAGCAGTGGTTCATCATCGAACCCTTCGCAGACTCGTTCACATGCGGCAGCATCAGCGGCGGCAGCTGCTTCTTCATCTTCTGCAGGGCCTCTTTCGCTGCCACCTTCCGAATCCTTAGCATCTAAGGCCTCTCTCTCCTCCTTTTCCTTTGAAGAAGAAGAACAAAATTACGAGGATCTTAATGAACCTGGAATTGATCAAGAGATTCCTGAAACTAACAACAATGCAGATACCAAATCTTGTGAACTTGATGATGTCCCAAAGGAAGTTAGACCATGTGAAACTGATTCTCTAGAAGATGGGCACATTGCATTCCTATTGAATTCGCTTCATCTGACAGCAGATAGGACTAATAGTGCTGTTGGCAAGCTGGAACAAGGACAAATTAGTGTTGATTTGTCTGGAATTACAGCCTCAATTGACGGTAACGTTGCGAATTCGGGTTTTAAACCGGAGCTGGCTAGTGTGGAATTGGGTGTATATGACACTTCAGAGAAACCTGTTATAGAAGAAGATAATAGCCATAATCAGTTCGGTGTCGGTGTATTAGGCTTGTCGCATATGGGCTATTCATGCCCGCCTCCCCCTCCACTTCCTCCATCAAAACCCATGGCCAGTTCAACTGCAAGAAGAGTTGGGTCATGTGTGTCAAGCACACAACGAAGTGGGTCTTCTAGAAGAAATTCACGGGCCACCATGGCATCAAGGTCCTCACCTACTGGTTCACACCCTTCATCACCGAGGTCACATGGAGATGGAGAAGGTTATAATAGTGCAGATGAACAAAGTCCCTGTTTCGGCTCTTATGATGATGCTGAAAGAGAACGGCAGTTTGAAATTGAAATTCGACGGTCAAAGGGGCTTGAAGTGAGGCGCATGATAGCAGATGGTAATTGCCTTTTTCGTGCAGTCGCTGATCAGGTTTATGGTGACCCAGAGGTGTATGATGTCACAAGACAGATGTGCATTGACTACATGGAGAAAGAGAGAGATCACTTCTCTCAATTTGTCACAGAAAGCTTCACAGCTTATTCCAAGAGAAAAAGGAGAGACAAGGTCTATGGTAATAATTTGGAAATCCAGGCAATGTCGGAGATATATAATCGTCCCATTCATATTTATTCATACAGCACAGAGCCTATCAACATATTTCATGGTAGTTATGGTACCGATTCTCCTCCTATACGGCTTAGCTATCATCGTGGAAACCACTACAATTCTCTTGTTGATCCACACAGATTGACAATTGGTGCTGGCCTCGGCTTTAGTAGTCTTCAAGGGAAAAATATAGACAAGGATCAAGTGAAAGCTGCTATAAAAGCACAGCAGGATCAGCAAATTGAAAATGCACTTTTAGCTGAGGGCCGCTTCTACTCTGATTTGGAGTTAACAGAGAAAGAAATTGAACGCATGGTGATGGAAGCCTCACGGGCTGAATATCTTGCCCAAGATAAATACAGACAACAATTCGGTTACAGAGAATCTTCCACTTCTGGTGCTGAGCCATCATCCTCAGCGACAGGAACATCCCGAAATGAAGTTAGCACATGGCATGGGGATTTTAAAGTGGTCGAAGACACTGCACTGTCAAGGAGTATCCACACGGTTCTGTCTATGGGCTTTAGCCCTGCGAGGGTGATAGAGGCGCACAGCATCTTTGGTGATGATGTAGAGTCCATGGTGTGTTATCTTCTGGAGACTGGGACAAGTAGTCCTGGAGGGGAAAGCATATACAGGATGAAAGGAAAAGCTGCAGAGAAATGA___AACATAGTGCATAAGCATATCTTGCCAGAGCCTAATTCTGGATGCAGTAGAATTCTTTTCCGGTTATGATACTATTTTTGGTCTCAATGCATTATATTTCAATTTTGAACCTAGCAATCTATCTAAATCTAGAATAGTAAAATTATGTGGGCCAGTGTCATCCTACGTACCTCATTCTATTGGAAAATTTGTACACAAGTATATTTTAGTATATAATATAAACAAACATGGAGGTCATTTGAAGTGACAGTTCGCAATCACTCACGTTGTTATATAAATTAAAATCGAAGTCTAGACTGCAAAGAAGATTTGCATGCCTGTGGCCATGCTTATACATGGTTCTGGTCTAATAAATACCTAGCAGTGATTTGTCTGTCCTCTTGCCATCCTGAATAGAACAGTGCTTAAATGCCTTAATGTGCCTCTTTCAGTGGGACCTAGGGTTATGTAAAACTTGATGTTAGTTTCAGCACGTGATGAATACAAGACATGATTTTACTTGTGAATAC

Fln Alignment:

Contig17713___DGNCLFRAVADQV---YGDP--------EVYDVTRQMCIDYMEKERDHFSQFVTESFTAYSKRKRRDKVYGNNLEIQAMSEIYNRPIHIYSYSTEPINIFH-GSYGTD---SPPIRLSYHRGNHYNSL
B8LMJ1_______________DGRCLFRAVAHGASLRSGKPAPNESLQRELADELRTRVADELLKRREETEWFIEGDFDKYVEQIKRPHVWGGEPELLMASHVLQMPITVYMRERETDGLIAIAEYGQDYGKGNPISVLYHGFGHYDAL

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
335	88			11	0.923564
346		11		88	0.923564
420		11		88	0.923564
441	62		37		1.0
442	37			62	1.0
445			42	57	1.0
446	57	42			1.0
447	57	42			1.0
448	42	57			1.0
449	42	57			1.0
452	57			42	1.0
453	57	42			1.0
455	57	42			1.0
458	57	42			1.0
459			42	57	1.0
467	25	75			0.996473
468	75		25		0.996473
470		75	25		0.996473
474	75	25			0.996473
475	75	25			0.996473
476	25			75	0.996473
484	25			75	0.996473
485		25	75		0.996473
489	75	25			0.996473
789	66		33		0.997452
846			11	88	0.923564
2520		11		88	0.923564
2610	20		80		0.995493
2661		16	83		0.994512
2663	83	16			0.994512
2665			83	16	0.994512
2750	83	16			0.994512
2752	83			16	0.994512
2753	83			16	0.994512
2779		80		20	0.995493
2869	30	70			1.0
2879	63		36		1.0
2987		90		10	0.90298
2989		60		40	1.0
3006		10		90	0.90298
3100	33			66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
2112	2123	TTC TTC TTC TTC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain