SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene17693

Length: 1921 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene17693

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ubiquitin C, isoform CRA_a [Mus musculus] gb\|EDL19561.1\| ubiquitin C, isoform CRA_a [Mus musculus]	-	-	1.0e-10	26%
FL-Next	tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	27%
Blast2go	ubiquitin c variant 9	-	-	0.0	50%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular process	GO:0009987	Biological Process	0.0	50%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin	IPR000626	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: Q7FPA4

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is longer than subject: 361 - 229

Fln protein: NKTKICLKTLPEHLPKQGGRIFAETKDGILPLVGISPLTRISEIKRKLEVMTGIPAAHQLLSSVGRVMHDDFHIKDFKGFHAIYEGSIIDLCKSGDSNLDQAHRRMIVFLNVEEQTFTLVVQPSDLVQNIMQMVESRTGISQWQQRITFSGKTLQEKKTLSEYFIYPECTIDVNVFKNPLKTLARSACKAHPEDENSDHLDEPVPKPAARKIKLARTQLGHILGVVTIPVLTTDRISDLKRKIRRFLQPLVEKNIPTGNNTAKEQQVQNVVAPKTFPAKGGGKFSIATHPEKQKLERSTSAIEKLLKQVSNSASLKSPCSKQSPPSTPTAYFTPPEVKECFSTPPTKLGPPTPRCLPQNF*

Protein Length: 362

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTCGTCGTGACTGCCGCTGCCTCTGGCGGTTTTCCTTCTGTATGCCTCGCAGAATTGTCGTTCAATTCGCGTCAAAGCAGTCGCCTGCGTTTCCCCCATCGCTTTCTGTTTAGTAGCCATGGTTTTATGAAGCAAGTTTGAACTGAATCCGAGCGTCATGGTAGGAATATCTGTGGCATTGGCCGTGGAGCATCTGCCCACCGCAAGCGTCCCGTCAACAATTTCTCTGGCAGCAAAGAACCGATTCATCTTGATTCCCAATCTCGATTCCCGGTCAACAGTGAAGGCCAATGTCAAGCAATTTCTGGAAGAATTTCTCTACATTCCTTCCCATTTGCAGTCCCTCTCGGCTCCCCTGTTCACCAAGCTAGGTGAAAACGAGTCTGTGGAGGATCTGTATCGTAGATATGACTGTCATGCCGAGGCGCAGGATCCTGGTATCCATGTAGACGAAGATACCTATACATTTTGGGGCAGAGAGGCTGGCAAGAGCGTTGATTTACAGGATGAACTTGCGCTGGAAGATTATCATATACTAGAATAAAACCAAGATATGTCTCAAGACACTCCCAGAACACTTGCCCAAACAAGGTGGCCGTATATTTGCAGAGACCAAAGATGGGATTCTTCCTTTGGTAGGGATTAGTCCTTTAACAAGGATCTCCGAGATAAAACGAAAACTAGAGGTTATGACAGGGATTCCTGCAGCCCACCAGCTGTTGTCTTCTGTTGGTCGAGTTATGCATGATGACTTCCATATCAAGGACTTCAAAGGTTTTCATGCAATTTATGAGGGCAGTATTATTGATCTCTGTAAATCAGGGGACAGCAATCTAGACCAAGCCCATCGTCGGATGATTGTTTTCCTGAATGTTGAGGAACAAACTTTCACTCTTGTAGTACAACCTTCCGATCTTGTTCAAAACATTATGCAGATGGTTGAATCCCGTACAGGAATCTCTCAGTGGCAGCAGCGTATCACATTTTCTGGGAAAACATTGCAGGAGAAGAAAACTCTTTCTGAATACTTCATCTACCCAGAGTGCACAATAGATGTGAATGTTTTCAAGAACCCCCTCAAAACCCTTGCAAGATCTGCTTGCAAGGCTCACCCGGAGGATGAGAATTCAGATCATCTGGATGAACCTGTACCGAAGCCTGCTGCCAGAAAAATCAAGCTAGCAAGGACACAGCTGGGGCATATTCTAGGTGTCGTTACTATTCCAGTTCTTACCACTGATAGAATATCTGACTTGAAGAGAAAAATTAGGAGATTTTTGCAGCCATTGGTTGAAAAGAATATACCAACAGGTAACAACACTGCTAAGGAACAGCAGGTTCAGAATGTTGTAGCTCCCAAAACATTTCCAGCGAAAGGGGGTGGTAAGTTTTCGATTGCCACTCATCCAGAGAAGCAAAAGCTTGAGAGAAGTACTTCAGCTATTGAAAAGTTGCTAAAACAAGTGTCCAATTCAGCTTCTTTGAAAAGCCCTTGCTCTAAGCAGTCACCTCCTTCGACTCCCACTGCATACTTCACTCCACCAGAAGTGAAAGAGTGTTTCTCCACCCCTCCAACTAAACTTGGCCCACCGACACCACGTTGTCTGCCACAAAACTTCTGA___TGCTGTAAAGTCCTTTTTGGTTCGCAAGCTACATTTTGGATCTCCATCTGATACTACTGTAACTCAATCTCATACTTCCCTTAAGAACCCGTGTAGGCAGAATTTTTCTCAGACCAAACAATCAAGCGAAAATCAATCTGCTGCTCAAGACCATGCACTAAAAGGAACTGGATATCATGTGTCAGTTATATCAAATGGACATGACTCTGAAAATTATCCCAACCAGCCTGTTGGAAATGAGAAGAATTATTCCAATCAGCCTGTTGGAAGTGAT

Fln Alignment:

Contig17693___GGRIFAETKDGILPLVGISPLTRISEIKRKLEVMTGIPAAHQLLSSVGRVMHDDFHIKDFKGFHAIYEGSIIDLCKSGDSNLDQAHRRMIVFLNVEEQTFTLVVQPSDLVQNIMQMVESRTGISQWQQRITFSGKTLQEKKTLSEYFIYPECTI
Q7FPA4_______________GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN----IQKESTLHLV------LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
172	96	3			0.99245
436		20	80		0.999996
437	80		20		0.999996
906	66	33			0.997452
907	66		33		0.997452
908	33	66			0.997452
931	75		25		0.996473
937		75	25		0.996473
1468		33		66	1.0
1619	60			40	1.0
1621	80		20		0.995493
1622		60		40	1.0
1623		60	40		1.0
1626		40	60		1.0
1630			40	60	1.0
1634		60		40	1.0
1638	60			40	1.0
1639	60	40			1.0
1732	80	20			0.995493
1733	80			20	0.995493
1735	80	20			0.995493
1736	80	20			0.995493
1737		80		20	0.995493
1738	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain