SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene17665

Length: 677 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene17665 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin carrier protein n=1 Tax=Zea mays RepID=C0P584_MAIZE	-	-	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	ubiquitin-conjugating enzyme e2 36	-	-	98%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	98%

Source	GOs	Term	Type	Identity
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	98%
Blast2go	root epidermal cell differentiation	GO:0010053	Biological Process	98%
Blast2go	response to iron ion	GO:0010039	Biological Process	98%
Blast2go	protein ubiquitination	GO:0016567	Biological Process	98%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	98%
Blast2go	protein binding	GO:0005515	Molecular Function	98%
Blast2go	UBC13-MMS2 complex	GO:0031372	Cellular Component	98%
Blast2go	plasma membrane	GO:0005886	Cellular Component	98%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	-
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	HAD-superfamily hydrolase, subfamily IA, variant 3	IPR006402	-	-
Sma3	Thioredoxin domain	IPR013766	-	-
Sma3		IPR015582	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	-
Sma3		IPR017936	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-

Full-Lengther Next Prediction

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
243		16		83	0.994512
246		16		83	0.994512
247		16		83	0.994512
251			83	16	0.994512
454	10	90			0.90298
455			10	90	0.90298
460		10		90	0.90298
462		90	10		0.90298
463		10		90	0.90298
468	88	11			0.923564
470	88	11			0.923564
473			11	88	0.923564
602		80		20	0.995493
603		80	20		0.995493
604	25			75	0.996473
605		75	25		0.996473
606	75			25	0.996473
608	25		75		0.996473
612	75	25			0.996473
613	75	25			0.996473
617	75		25		0.996473
618		75	25		0.996473
620		75	25		0.996473
622		75	25		0.996473
623	50		25	25	0.995533
627	25		25	50	0.995533
630	66	33			0.997452
631	66	33			0.997452
633	33	33		33	0.997753
636		33	66		0.997452
637		33		66	0.997452
638		66	33		0.997452
639	66	33			0.997452
641	33		33	33	0.997753
642	33		33	33	0.997753
644	33	33	33		0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain