SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene17651

Length: 2557 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene17651
CGTCGTGACCTTGGCTGTCACTCAATTCGTCCAATTGAATGAAATTGTTGAATTCAACTCACGATACAACTGGTTGTTAGCCATCCCTCTTCCCATTCTCGTTTGTCTGTTTTGTTTTGTTTTGTTTTCCCTCTCAGACAGTCGCCATAGTTCTTGCTACTCAGAGATTCCAGCCTGTTTGGCTTCCCTCAGACAGACATACGGTCGTTTTTGTATCTAATTCTTCGTTGAATTGACCATCCGCTCTGAACCATCGACGTCGCTGCAAAATCCCGAATAATTCTTCGTGTAATCGCTCCATATTCGGCTCTCTGCATGACACAATCTATCTGGTCTGTGCCTACAGCAAAGCTTTAGCTGACAATCCAAGTCCTTGTGGTTGATTTGAGTCCCATTTTAGCCCATCTTAGAGATGTTCAGGAGAGCAAAACTTGATGGGTTGCATTGACAACAGCAAAGTTCAGAAGACATTGAAGAAGTGGTTTTTCATAGATAAAAGGGTTGGGTGAATACCTGTGCTTCTGAATTCACTCGGTGAAGATTATACATCTGAGTCAAGGATACTTGCTCAGTTTACAAGTTCTTTACAGGGAAGACTTTTCATTGACTTAAGATAAATCCTTTTCATAGTCATTTTGGTGGTATGGCATACGGATTAGAGCAAAATGCTGTTCTTACTGATCCTCCCGCAGTAGTCCCAAATTTACCCTTGCCTACAAATTCATCATCATCACTGTATTCTCCAAGTTCAACTTCTGGTAGCTCAGTACCTACAGCTCAACGAAAGATGCTTTCAAGATCTTGATTAGTCGCTGTTCTTACTGATTCTTCTACAATAGTTCCAAATTCATCCGTGTTTACATATTCATCAATAACACCATATTCTCCAAGTTCAACATCTGGTAGCTCAACACCAACAGCTCAAAAAAAGGTGCTTTCAAGATCAATCAGTGCTGTTCTTACTGATTCTTCCACGGTTGTTCTTACTGATCCTCCCATGCCAGTTCCAGTTCCACCCATGCTTTCATTTTCATTATCATCAAGGTATTCTCCAAGGTCAGCATCTGGTAGCCCAGTATCTAGAGCTCAAAGAATGGTTCTTCCAAACAGGATCGATGTTGAGAATCGTGTTAGCCTTATCAATGCAATGAGAGCCTCATCTCCTACTCATGCCCGTCAGGAAGCAGCCTATCGTGCCTGGACTGGTAAGCATCCTTCAGCATTGACCATGTTTGAGATGATGATGGATGCATCAAAAGGCAAGCAAATTGTAGTGTTCTTGGATTATGATGGCACTCTTTCACCTATTGTAAATGATCCTGATCGTGCTTACATGTCGAAACAGATGCGTGCAACGGTTAGAAAAGTAGCAAGATATTTTCCTACTGCTATCATTACTGGAAGGTGCACAGCTAAGGTGTATGAGTTTGTAAAGTTAGCCGAACTGTATTATGCTGGTAGCCATGGCATGGACATTATGGGACCAGCCAAAAGTTCAAAGGGCTCTAAGGCGAACTGTTCTAGGACAACAGACAAAAAAGGTGGTGTTGTTCTCTACCAGCCTGCCAGTGAGTTCTTACCAATGATAGACAAGGTTTTTGCATTGCTGGTTGAAAAGACAAAGAAAATCAGTGGAGCCATAGTTGAAAATCACAAATTTTGTGCTTCTGTGCATTATCGACGTGTTGAAGAGAAGAGTTGGGCTGCACTTGCAGAGCAAGTAGCAAGTGTAGTTAAAGAGTATCCTCAATTGCGACTGACACAAGGAAGGAAGGTCTTAGAGATTCGTCCTATAATTAAATGGGACAAAGGAAAAGCCCTTGAATATTTATTAGTGTCACTTGGATTGGCAAATCGGAATGATGTACTACCATTGTATATAGGAGATGATCGTTCAGATGAAGATGCATTTAAGGTACTGCGGGACAGAGGTCAAGGTTATGGGATTCTTGTGTCCACTGCCCCCCAAGAAACAAATGCAGCATATTCACTTAAAGAACCGTCTGAGGTTATGAATTTTTTGAATCGCCTCGTGAATTGGAAGCGGGATTCCAAAAAGCGTCCATTGTCTAAAGTGTAAATGGGCATTCGGGATTTGGTATATGGTGATGCCCAGGTTTTGGAATTTGACAATGTGCATAGCAACGCCAGTAATGAAGGGTGGTTTTAAATCCTTTTGACTGATCACCATATCTATATGTAATACACCATCATTTTGTATTTCAAGGAAAAGTTTTTGAGATATCTGCCTAGTTGTCTTTGTAATTGAGCAATGCTCAAGTTGCATGGACATGATAAGTTACGGTGATTTTTATGTCACTGGTTTGTATTCTGTGATAGGAAAGTCATAAATGTTAAGAAAAAGGGGAAAAATGAAAAAAAAATTGGCATCCCCATTTGCTATAGCAATGGCAATGGTTATGCTTACTTTTGTCTTGGAAATATTCAATATTTTGAAGTAATCTTAACAAAGATTGCTTTAACAATGAACATTCTTCCAGAACCTCAATGCATTTATTATCATGGTTCACTGTACACAATAAAGCGAATTTCAATT

Ace file of the UniGene sp_v2.0_unigene17651

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	haloacid dehalogenase-like hydrolase domain-containing protein [Arabidopsis thaliana] dbj\|BAD44653.1\| putative trehalose-phosphatase [Arabidopsis thaliana] gb\|AEE31836.1\| haloacid dehalogenase-like hydrolase domain-containing protein [Arabidopsis thaliana	-	-	66%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	68%
Blast2go	trehalose-phosphate phosphatase-like	-	-	78%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Trehalose-phosphatase	IPR003337	-	-
Sma3	HAD-superfamily hydrolase, subfamily IIB	IPR006379	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9HFI0

Fln msg:

Fln protein: MPVPVPPMLSFSLSSRYSPRSASGSPVSRAQRMVLPNRIDVENRVSLINAMRASSPTHARQEAAYRAWTGKHPSALTMFEMMMDASKGKQIVVFLDYDGTLSPIVNDPDRAYMSKQMRATVRKVARYFPTAIITGRCTAKVYEFVKLAELYYAGSHGMDIMGPAKSSKGSKANCSRTTDKKGGVVLYQPASEFLPMIDKVFALLVEKTKKISGAIVENHKFCASVHYRRVEEKSWAALAEQVASVVKEYPQLRLTQGRKVLEIRPIIKWDKGKALEYLLVSLGLANRNDVLPLYIGDDRSDEDAFKVLRDRGQGYGILVSTAPQETNAAYSLKEPSEVMNFLNRLVNWKRDSKKRPLSKV*

Protein Length: 362

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCGTCCAATTGAATGAAATTGTTGAATTCAACTCACGATACAACTGGTTGTTAGCCATCCCTCTTCCCATTCTCGTTTGTCTGTTTTGTTTTGTTTTGTTTTCCCTCTCAGACAGTCGCCATAGTTCTTGCTACTCAGAGATTCCAGCCTGTTTGGCTTCCCTCAGACAGACATACGGTCGTTTTTGTATCTAATTCTTCGTTGAATTGACCATCCGCTCTGAACCATCGACGTCGCTGCAAAATCCCGAATAATTCTTCGTGTAATCGCTCCATATTCGGCTCTCTGCATGACACAATCTATCTGGTCTGTGCCTACAGCAAAGCTTTAGCTGACAATCCAAGTCCTTGTGGTTGATTTGAGTCCCATTTTAGCCCATCTTAGAGATGTTCAGGAGAGCAAAACTTGATGGGTTGCATTGACAACAGCAAAGTTCAGAAGACATTGAAGAAGTGGTTTTTCATAGATAAAAGGGTTGGGTGAATACCTGTGCTTCTGAATTCACTCGGTGAAGATTATACATCTGAGTCAAGGATACTTGCTCAGTTTACAAGTTCTTTACAGGGAAGACTTTTCATTGACTTAAGATAAATCCTTTTCATAGTCATTTTGGTGGTATGGCATACGGATTAGAGCAAAATGCTGTTCTTACTGATCCTCCCGCAGTAGTCCCAAATTTACCCTTGCCTACAAATTCATCATCATCACTGTATTCTCCAAGTTCAACTTCTGGTAGCTCAGTACCTACAGCTCAACGAAAGATGCTTTCAAGATCTTGATTAGTCGCTGTTCTTACTGATTCTTCTACAATAGTTCCAAATTCATCCGTGTTTACATATTCATCAATAACACCATATTCTCCAAGTTCAACATCTGGTAGCTCAACACCAACAGCTCAAAAAAAGGTGCTTTCAAGATCAATCAGTGCTGTTCTTACTGATTCTTCCACGGTTGTTCTTACTGATCCTCCC_-_ATGCCAGTTCCAGTTCCACCCATGCTTTCATTTTCATTATCATCAAGGTATTCTCCAAGGTCAGCATCTGGTAGCCCAGTATCTAGAGCTCAAAGAATGGTTCTTCCAAACAGGATCGATGTTGAGAATCGTGTTAGCCTTATCAATGCAATGAGAGCCTCATCTCCTACTCATGCCCGTCAGGAAGCAGCCTATCGTGCCTGGACTGGTAAGCATCCTTCAGCATTGACCATGTTTGAGATGATGATGGATGCATCAAAAGGCAAGCAAATTGTAGTGTTCTTGGATTATGATGGCACTCTTTCACCTATTGTAAATGATCCTGATCGTGCTTACATGTCGAAACAGATGCGTGCAACGGTTAGAAAAGTAGCAAGATATTTTCCTACTGCTATCATTACTGGAAGGTGCACAGCTAAGGTGTATGAGTTTGTAAAGTTAGCCGAACTGTATTATGCTGGTAGCCATGGCATGGACATTATGGGACCAGCCAAAAGTTCAAAGGGCTCTAAGGCGAACTGTTCTAGGACAACAGACAAAAAAGGTGGTGTTGTTCTCTACCAGCCTGCCAGTGAGTTCTTACCAATGATAGACAAGGTTTTTGCATTGCTGGTTGAAAAGACAAAGAAAATCAGTGGAGCCATAGTTGAAAATCACAAATTTTGTGCTTCTGTGCATTATCGACGTGTTGAAGAGAAGAGTTGGGCTGCACTTGCAGAGCAAGTAGCAAGTGTAGTTAAAGAGTATCCTCAATTGCGACTGACACAAGGAAGGAAGGTCTTAGAGATTCGTCCTATAATTAAATGGGACAAAGGAAAAGCCCTTGAATATTTATTAGTGTCACTTGGATTGGCAAATCGGAATGATGTACTACCATTGTATATAGGAGATGATCGTTCAGATGAAGATGCATTTAAGGTACTGCGGGACAGAGGTCAAGGTTATGGGATTCTTGTGTCCACTGCCCCCCAAGAAACAAATGCAGCATATTCACTTAAAGAACCGTCTGAGGTTATGAATTTTTTGAATCGCCTCGTGAATTGGAAGCGGGATTCCAAAAAGCGTCCATTGTCTAAAGTGTAA___ATGGGCATTCGGGATTTGGTATATGGTGATGCCCAGGTTTTGGAATTTGACAATGTGCATAGCAACGCCAGTAATGAAGGGTGGTTTTAAATCCTTTTGACTGATCACCATATCTATATGTAATACACCATCATTTTGTATTTCAAGGAAAAGTTTTTGAGATATCTGCCTAGTTGTCTTTGTAATTGAGCAATGCTCAAGTTGCATGGACATGATAAGTTACGGTGATTTTTATGTCACTGGTTTGTATTCTGTGATAGGAAAGTCATAAATGTTAAGAAAAAGGGGAAAAATGAAAAAAAAATTGGCATCCCCATTTGCTATAGCAATGGCAATGGTTATGCTTACTTTTGTCTTGGAAATATTCAATATTTTGAAGTAATCTTAACAAAGATTGCTTTAACAATGAACATTCTTCCAGAACCTCAATGCATTTATTATCATGGTTCACTGTACACAATAAAGCGAATTTCAATT

Fln Alignment:

Contig17651___INAMRASSPTHARQEAAYR----AWTGKHPSALTMFEMMMDASKGKQIVVFLDYDGTLSPIVNDPDRAYMSKQMRATVRKVARYFPTAIITGRCTAKVYEFVKLAELYYAGSHGMDIMGPAKSSKGSKANCSRTTDKKGGVVLYQPASEFLPMIDKVFALLVEKTKKISGAIVENHKFCASVHYRRVEEKSWAALAEQVASVVKEYPQLRLTQGRKVLEIRPIIKWDKGKALEYLLVSLGLANRNDVLPLYIGDDRSDEDAFKVLRDRGQGYGILVSTAPQETNAAYSLKEPSEVMNFLNRLVNWKR
B9HFI0_______________VDSMRASSPTHIKSTPSVNEDQSSWILHHPSALEMFEQIIDASKGKQIVMFLDYDGTLSPIVDDPDKAFMSKQMRATVRKLARFFPTAIVSGRCRDKVYNFVRLAELYYAGSHGMDIKGPAKGSKYKKG---------GDGVVFQAASEFLPMIDEVYEELVEKTKTTPGAKVENNKFCLSVHYRCVDEKKWSGLAQVVKSVLKEYPKLRLTQGRKVLEIRPTIKWDKGKALEFLLESLGFANCTDVFPVYIGDDRTDEDAFKVLRERGQGFGILVSKIPKDTSASYSLQEPTQVMDFLRRLVEWKR

SNPs (tot: 96)

Position	A %	C %	G %	T %	Probability
150		16	83		0.994512
151			16	83	0.994512
154			16	83	0.994512
159	83			16	0.994512
160		83	16		0.994512
161			16	83	0.994512
163	83			16	0.994512
165	83			16	0.994512
166		16	83		0.994512
168		16		83	0.994512
171	16	83			0.994512
190		83		16	0.994512
334	20			80	1.0
335		80	20		1.0
336	20			80	1.0
338		5		21	1.0
371		66		25	1.0
397		14		85	0.993533
398			14	85	0.993533
401		85		14	0.993533
402		71	14	14	0.984337
403	14	85			0.993533
404	85		14		0.993533
406		85	14		0.993533
407	14		14	71	0.984337
408		16		83	0.994512
416		16		75	0.99999
525	85	14			0.993533
553	85	14			0.993533
558	85		14		0.993533
559			85	14	0.993533
563	85	14			0.993533
570		83	16		0.994512
571	83			16	0.994512
572		16	83		0.994512
573	16			83	0.994512
574		28		71	1.0
575			14	85	0.993533
576	71	14		14	0.984337
577	14	85			0.993533
578	85		14		0.993533
579	85			14	0.993533
581	14			85	0.993533
582		14		85	0.993533
586			14	85	0.993533
587	85		14		0.993533
589	83			16	0.994512
591			83	16	0.994512
592		16	83		0.994512
594	83	16			0.994512
595			83	16	0.994512
596	83	16			0.994512
597	16	83			0.994512
612	85	14			0.993533
614	85			14	0.993533
615		14		85	0.993533
616	85		14		0.993533
617	85			14	0.993533
618	85		14		0.993533
619	14			85	0.993533
624			14	85	0.993533
625			14	85	0.993533
627	85		14		0.993533
630		14	85		0.993533
666	16		83		0.994512
985	33			66	0.997452
986		33	66		0.997452
989		66		33	0.997452
1620	66			33	0.997452
1624	66			33	0.997452
1625	66		33		0.997452
1626			33	66	0.997452
1628	66			33	0.997452
1631		33	66		0.997452
1632	33		66		0.997452
1633	66	33			0.997452
1634			66	33	0.997452
1636	33	66			0.997452
1696			20	80	0.995493
1697			20	80	0.995493
1830			12	87	0.992554
1831	87		12		0.992554
1850	90	10			0.90298
1851	90		10		0.90298
1857	90	10			0.90298
1860	80		20		0.999996
1869	10	90			0.90298
1919		90	10		0.90298
2248			11	88	0.923564
2249	88			11	0.923564
2250			88	11	0.923564
2252		11		88	0.923564
2254		11		88	0.923564
2381	50			25	0.995533
2383	20			80	0.995493
2492		66		33	0.997452

SSRs (tot: 2)

Start position	End position	Sequence	Length
108	128	TGTTT TGTTT TGTTT TGTTT T	21
722	733	TCA TCA TCA TCA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain