SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene17431

Length: 939 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene17431

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Lipoxygenase n=2 Tax=Populus trichocarpa RepID=B9HJW6_POPTR	-	-	66%
FL-Next	sp=Lipoxygenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	60%
Blast2go	lipoxygenase 1	-	-	78%

Source	InterPros	Term	Type	Identity
Sma3	Ketose-bisphosphate aldolase, class-II	IPR000771	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Lipoxygenase	IPR000907	-	-
Sma3	Lipoxygenase, LH2	IPR001024	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Lipoxygenase, plant	IPR001246	-	-
Sma3	Lipoxygenase, C-terminal	IPR013819	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLK5

Fln msg: STOP codon was not found. Distance to subject end: 2 aas, your sequence is shorter than subject: 313 - 930

Fln protein: DGMNINALARQILINGGGILERTVFPGKYAMEMSAVAYKDWRFDEQGLPADLLKRGMAVVDSSMPHGLKLIIEDYPYAVDGLEIWFAIVSWVKEYLSLYYQNDDAVKSDRELQAWWTEIRNVGHGDKKDETWWYSMDNVEDVEKAITTIIWVASALHAAVNFGQYPYAGYMPNRPTISRRLIPEEGSEEFSELVQNPDLFLLRTISNQFETTLGIALIEILSTHSTDEVYLGQRATSEWSEAERVTEAFERFGMKLKELEKNIRERNEDAEKLKNRCGPAQVPYTLLYPNTSDVSHKGGLTGKGIPNSVSIYI

Protein Length: 314

Fln nts: GATGGGATGAACATCAACGCTCTGGCTCGCCAAATTCTTATAAATGGCGGAGGCATTCTTGAAAGAACAGTGTTTCCTGGAAAGTATGCCATGGAGATGTCCGCGGTAGCATACAAGGACTGGAGGTTTGACGAACAAGGGTTGCCTGCAGATCTTCTCAAAAGGGGTATGGCAGTGGTGGACTCATCAATGCCCCACGGACTTAAGCTGATAATCGAAGACTACCCTTATGCTGTGGATGGATTGGAGATATGGTTCGCAATAGTGTCATGGGTTAAGGAGTACCTGTCCTTGTACTATCAGAACGATGATGCAGTGAAATCTGATAGGGAGCTTCAAGCATGGTGGACCGAAATCAGAAATGTGGGTCACGGAGACAAGAAGGACGAGACATGGTGGTACAGCATGGACAACGTGGAAGATGTTGAAAAGGCAATAACAACAATCATATGGGTGGCCTCTGCTCTTCACGCTGCAGTTAATTTCGGGCAATACCCATACGCAGGATACATGCCAAATCGGCCCACCATCAGCAGAAGGTTAATTCCGGAAGAAGGGTCTGAAGAATTCTCAGAGCTGGTGCAGAATCCGGACTTGTTTTTGCTGAGAACGATAAGCAACCAATTTGAAACGACACTGGGCATAGCGTTGATAGAAATTCTGTCCACGCACTCCACAGACGAAGTATATCTAGGACAAAGAGCCACGAGTGAATGGAGTGAGGCTGAACGTGTAACAGAAGCTTTTGAACGCTTCGGTATGAAGCTGAAAGAGCTTGAGAAAAATATAAGAGAGAGAAACGAAGATGCAGAAAAGTTGAAGAACAGATGTGGTCCTGCTCAGGTTCCTTATACTTTGCTTTATCCAAACACCTCGGATGTGAGTCATAAAGGTGGACTCACTGGTAAAGGAATTCCCAATAGCGTTTCTATTTACATT

Fln Alignment:

Contig17431___MNINALARQILINGGGILERTVFPGKYAMEMSAVAYKDWRFDEQGLPADLLKRGMAVVDSSMPHGLKLIIEDYPYAVDGLEIWFAIVSWVKEYLSLYYQNDDAVKSDRELQAWWTEIRNVGHGDKKDE-TWWYSMDNVEDVEKAITTIIWVASALHAAVNFGQYPYAGYMPNRPTISRRLIPEEGSEEFSELVQNPDLFLLRTISNQFETTLGIALIEILSTHSTDEVYLGQ--RATSEWSEAERVTEAFERFGMKLKELEKNIRERNEDAEKLKNRCGPAQVPYTLLYPNTSDVSHKGGLTGKGIPNSVSI
B8LLK5_______________MDINQAARQSLINADGVIELGFTPGKYSTEMSSKIYKEWKFNEQGLPADLLKRGMAVRNPTSPYGLKLVIEDYPYAVDGLEIWLSLKEWVSDYLSLYYKDDASIKRDQELQAWWNEIVNVGHGDLKDDPSRWYKMETKEEVVEAVTTIIWIASAHHAAVNFGQYSYGGYMPNLPTMSRRLIPEKGSEEYSEMLRDVDAYFLRTVSTPRQATLIMAVLEILSQHAKHEVYIGQIHGSTPDWVDDSGVEEAFNRFSSRLVQLEKNVIDRNNN-PNLKNRHGPAQVPYTLLYPNTSDLSESGGLIVQGVPNSISI

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
450	66		33		0.997452
451			33	66	0.997452
491	80		20		0.995493
501		80		20	0.995493
566	85		14		0.993533
604		88		11	0.923564
690		73		26	1.0
868	37		62		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain