SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene17394

Length: 632 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene17394 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative F-box GID2 protein n=1 Tax=Selaginella moellendorffii RepID=A9LY18_SELML	-	-	5.0e-18	45%
FL-Next	sp=F-box protein SNE; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	48%
Blast2go	f-box protein sne	-	-	8.26759e-22	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	positive regulation of gibberellic acid mediated signaling pathway	GO:0009939	Biological Process	8.26759e-22	63%
Blast2go	seed germination	GO:0009845	Biological Process	8.26759e-22	63%
Blast2go	regulation of shoot development	GO:0048831	Biological Process	8.26759e-22	63%
Blast2go	seed dormancy process	GO:0010162	Biological Process	8.26759e-22	63%
Blast2go	protein binding	GO:0005515	Molecular Function	8.26759e-22	63%
Blast2go	SCF ubiquitin ligase complex	GO:0019005	Cellular Component	8.26759e-22	63%
Blast2go	nucleus	GO:0005634	Cellular Component	8.26759e-22	63%

Source	InterPros	Term	Type	e value	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
415		85		14	0.993533
416		71	14		0.984337
417	11			88	0.923564
418		88	11		0.923564
494		77	22		1.0
549		76	24		1.0
573			76	24	1.0
598		8		92	0.999718
601	9		90		0.999872
611		16	5	77	1.0
612		27	66	5	1.0
613	64	35			1.0
614		35	64		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain