SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene17278

Length: 860 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene17278

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os01g0744300 protein (Fragment) n=4 Tax=Oryza sativa RepID=Q0JJE0_ORYSJ	-	-	1.0e-35	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	serine threonine protein kinase	-	-	1.58853e-38	97%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Translation elongation factor P/YeiP, conserved site	IPR013852	-	-
Sma3		IPR015706	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
259	88	7			0.999079
260	92		7		0.999664
261	92			7	0.999664
262	92	7			0.999664
266	7		92		0.999664
267		7	92		0.999664
270	92			7	0.999664
271	92		7		0.999664
273	92	7			0.999664
274	92			7	0.999664
277		7		84	0.99801
280	92	7			0.999664
605		88		11	0.923564
696	44	56			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain