SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene17242

Length: 1733 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene17242

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cytosolic aldehyde dehydrogenase n=1 Tax=Oryza sativa Japonica Group RepID=Q9LRE9_ORYSJ	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	cytosolic aldehyde dehydrogenase	-	-	79%

Source	InterPros	Term	Type	Identity
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Aldehyde dehydrogenase, N-terminal	IPR016162	-	-
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLF5

Fln msg:

Fln protein: MASLSSQSNGTVCPAVTVKHTKLFINGEFVDSVSGIKFDTLDPRTGEVIASVSEARQEDVDLAVKSARAAFDHGPWPRMSGYERGCILHKFADLVMQHSEQLAVLETFDSGKPLDMSRMMDLPYSLEVLRYYAGSADKIHGLTLKMSGPYQAHTLREPIGVVGQIIPWNFPLLMFFSKVSPALACGCTVVIKSAEQTPLTALYCAQLASEAGIPPGALNVLSGFGKTAGAAMSSHMDIDKISFTGSTQVGRLIMEAAAKSNLKPVTLELGGKSPLIVMEDADIDEAVDIAHLAVFSNMGQACLAGSRVFVQESIYDEFVKKAVERAKKQVVGDPFMSGVHQGPQIDKLQFEKVLKYIQYGKDEGANLVSGGSCLGGPGFHIETTIFSDVQDDMKIAQDEIFGPVMSILKFKTIDEAIERGNKTIYGLGAGIVTKNINVANRFSRSLPAGMVWINCYLLGSGDYPMGGYKMRGIGRESGSNGLENYLQVKCVITPLQESPWL*

Protein Length: 503

Fln nts: ATGGGAACGTTCGATTATCATTCGGAGCCTCTTTCTGGCCCAAAAGAAACTCCGAG_-_ATGGCGTCCCTTTCTTCCCAATCGAATGGCACCGTTTGCCCCGCAGTTACAGTAAAGCATACGAAGCTCTTCATCAATGGAGAGTTTGTAGATTCAGTTTCAGGGATAAAGTTCGACACTTTGGATCCTCGAACAGGGGAAGTGATAGCGAGCGTATCAGAGGCCAGGCAAGAAGATGTGGATTTGGCTGTAAAATCCGCTCGCGCAGCATTTGATCACGGGCCATGGCCTCGCATGTCTGGCTATGAAAGAGGGTGCATTCTTCACAAGTTCGCGGATCTGGTGATGCAACACAGTGAGCAGCTCGCAGTTCTTGAAACTTTTGACAGTGGAAAGCCACTGGATATGTCTCGGATGATGGATTTACCATACTCTCTCGAGGTTCTACGATATTATGCTGGATCGGCTGACAAGATCCATGGACTAACATTGAAGATGAGTGGACCTTATCAAGCCCATACTTTGCGTGAGCCCATCGGAGTTGTTGGTCAGATAATACCCTGGAACTTTCCATTGCTGATGTTTTTCTCTAAGGTCTCTCCTGCATTGGCCTGCGGATGTACAGTGGTTATCAAATCTGCAGAGCAGACTCCCTTAACCGCACTTTATTGTGCACAACTAGCCAGCGAGGCAGGAATACCCCCTGGGGCTCTTAATGTGCTCTCTGGCTTTGGTAAAACTGCTGGTGCTGCCATGAGCAGCCACATGGATATTGATAAGATATCATTTACAGGGTCAACTCAAGTTGGGCGACTTATTATGGAGGCTGCTGCAAAGAGCAACTTGAAGCCTGTGACATTAGAATTGGGTGGAAAATCCCCTCTCATTGTTATGGAGGACGCTGATATTGATGAAGCTGTGGATATTGCCCATCTAGCAGTATTTAGCAACATGGGGCAAGCCTGCTTGGCAGGTTCACGGGTGTTTGTTCAAGAAAGCATTTATGATGAATTTGTGAAGAAAGCAGTGGAAAGAGCAAAGAAGCAAGTGGTCGGAGACCCTTTTATGTCTGGGGTCCATCAAGGCCCTCAGATCGACAAGTTGCAATTTGAAAAAGTGCTAAAATATATTCAATATGGAAAAGATGAAGGAGCTAATTTAGTGAGTGGAGGTAGTTGTTTAGGTGGTCCAGGATTTCATATTGAAACTACAATATTCTCTGATGTTCAGGATGATATGAAGATTGCACAAGATGAAATTTTTGGACCAGTGATGTCTATTTTGAAATTCAAGACTATAGATGAAGCCATAGAAAGAGGAAATAAAACAATTTACGGTTTGGGGGCTGGAATTGTTACTAAAAACATAAATGTGGCTAATAGATTTAGTAGATCTTTACCTGCTGGAATGGTATGGATCAATTGTTACCTTCTAGGGAGTGGAGACTATCCAATGGGTGGATACAAGATGAGAGGAATTGGGAGAGAATCGGGATCTAATGGCCTTGAAAATTATTTACAAGTCAAATGCGTCATTACTCCACTTCAAGAATCTCCTTGGTTATAA___GAGCTTCTTATGGCTTTTTATGTTATTTTATATTATTGTTACTCCACTTCAAGAATCTCTTTGATTATAAGAGCTTCTTATGAATTTTTATGTTATTTTATATTATTGTATGGTATATAACTATTACAGTAAGAATGTCCATTTATATACAATAAGAAGTGGATTTGAATC

Fln Alignment:

Contig17242___MASLSSQSNGTVCPAVTVKHTKLFINGEFVDSVSGIKFDTLDPRTGEVIASVSEARQEDVDLAVKSARAAFDHGPWPRMSGYERGCILHKFADLVMQHSEQLAVLETFDSGKPLDMSRMMDLPYSLEVLRYYAGSADKIHGLTLKMSGPYQAHTLREPIGVVGQIIPWNFPLLMFFSKVSPALACGCTVVIKSAEQTPLTALYCAQLASEAGIPPGALNVLSGFGKTAGAAMSSHMDIDKISFTGSTQVGRLIMEAAAKSNLKPVTLELGGKSPLIVMXXXXXXXXXXXXHLAVFSNMGQACLAGSRVFVQESIYDEFVKKAVERAKKQVVGDPFMSGVHQGPQIDKLQFEKVLKYIQYGKDEGANLVSGGSCLGGPGFHIETTIFSDVQDDMKIAQDEIFGPVMSILKFKTIDEAIERGNKTIYGLGAGIVTKNINVANRFSRSLPAGMVWINCYLLGSGDYPMGGYKMRGIGRESGSNGLENYLQVKCVITPLQESPWL
B8LLF5_______________MAPLSSESN-TVLPPVTVKYTKLFINGEFVDSVSGKTFETLDPRTGEAITRVSEAQKEDVDLAVKAARAAFDHGPWPRMSGFERGRILYKYADLVSQHGDELAALETFDNGKPLDMARILDIPYSVEVIRYNAGFADKIHGLTLKMSGQYQGYTLHEPIGVVGQMIPWNFPILTFFSKVSPALACGCTVVIKSAEQTPLTALYCAQLANEAGIPPGVLNVLSGFGETAGASISSHMDIDKISFTGSTQVGRLIMEAAAKSNLKPVTLEMGGKSPLIVMDDADVDKAVNIAHLAVYTNMGQVCLAGSRVFVQEGIYDEFVKKAVARAKQQVVGDPFQPGVQHGPQIDKMQFEKILKYIQYGKRDGANLVLGGNSLGNKGFYIEPTIFSDVEDDMQIAKEEIFGPIMSILKFKTIEEVIERGNKTIYGLGAGIITKDIDIANRLARSLRVGTVWINCYLVVGADVPLGGYKMSGIGREYGSYGLTNYLQVKCVISPLQHSPWL

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
461		90	10		0.90298
572		11		88	0.923564
692		14	85		0.993533
1182	25		75		0.996473
1343	33		66		0.997452
1399		16	83		0.994512
1403	16			83	0.994512
1411			16	83	0.994512
1417		16		83	0.994512
1447	25		75		0.996473
1472	25	75			0.996473
1490			75	25	0.996473
1575	85	14			0.993533
1629	66		33		0.997452
1649	33	66			0.997452
1676	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain