SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene17239

Length: 1261 nt

Origin of reads: Inia v1 Biogeco1 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene17239 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cinnamoyl-CoA reductase, putative n=1 Tax=Ricinus communis RepID=B9SC77_RICCO	-	-	66%
FL-Next	tr=Cinnamoyl-CoA reductase, putative; Ricinus communis (Castor bean).	-	-	75%
Blast2go	bifunctional dihydroflavonol 4-reductase flavanone 4-reductase-like	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	seed development	GO:0048316	Biological Process	80%
Blast2go	meristem structural organization	GO:0009933	Biological Process	80%
Blast2go	sporopollenin biosynthetic process	GO:0080110	Biological Process	80%
Blast2go	leaf development	GO:0048366	Biological Process	80%
Blast2go	tRNA modification	GO:0006400	Biological Process	80%
Blast2go	calmodulin binding	GO:0005516	Molecular Function	80%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	-
Sma3	NmrA-like	IPR008030	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9SC77

Fln msg: Separated hits, possible frame ERROR between 201 and 288, your sequence is longer than subject: 368 - 328

Fln protein: MSMAQTREKDDVSITNSKGLVCVTGAAGYLASWLIKRLLQRGYHVRGTVRDPGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGNEKKMAHLWKLDGAKERLQLMKADLMDEGSFDEVIRGCHGVFHTASPVVGVKSDPKAEIVDPAVRGTLNVLRSCKRSPSVRRVVLTSSSSAVRARDDFGPSVPLDESSWSSVELCEKLQIWYALAKTLAEKAAWDFAEENNLDMVAVLPTFVIGPSLPPSLCSTASDVLGLLKGETQKFTLHGRMGYVHIDDVAGCHILVYEEPPAKGRYICSSAVLENCDLGAMLADCYPHLNVPTQFENVWGDRAYYNYNTSKLRALGFEFKSIQEMFQDCIESLKEQGHI*

Protein Length: 369

Fln nts: ATGGGGACATAGGGCTCTTTCATTTTTTCTGTGGTAAAC_-_ATGTCTATGGCTCAAACCAGAGAGAAAGACGACGTTAGCATAACAAACTCCAAAGGATTGGTGTGCGTGACAGGAGCGGCTGGTTACTTGGCATCTTGGCTTATCAAGCGTCTCCTCCAGCGTGGTTACCATGTGAGAGGAACTGTGCGGGATCCTGGTAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGGCAATGAGAAAAAGATGGCTCATTTATGGAAGTTAGATGGGGCGAAAGAGAGACTGCAACTAATGAAAGCTGATCTAATGGACGAGGGCAGCTTCGATGAAGTCATCAGAGGCTGCCATGGTGTTTTTCACACAGCGTCTCCAGTTGTGGGTGTCAAATCAGATCCCAAGGCTGAGATTGTTGACCCAGCCGTTAGAGGAACTCTGAACGTACTTAGATCTTGCAAGAGAAGTCCCTCAGTAAGGCGAGTGGTACTCACTTCTTCATCTTCCGCTGTCAGAGCCAGAGATGATTTCGGTCCATCTGTGCCTCTGGACGAATCCAGCTGGAGCTCTGTCGAACTTTGTGAAAAATTACAGATATGGTATGCTCTGGCCAAGACTTTAGCAGAAAAAGCAGCATGGGATTTTGCGGAAGAAAACAATCTGGACATGGTTGCAGTTCTTCCCACATTTGTAATTGGGCCAAGTCTTCCTCCTAGCCTGTGCTCAACTGCATCTGATGTCCTTGGTTTGTTAAAAGGAGAAACGCAGAAATTTACTCTGCACGGACGAATGGGATACGTTCACATTGACGACGTTGCTGGTTGTCACATTCTGGTATATGAGGAACCCCCTGCCAAAGGACGTTACATATGCTCCTCTGCTGTGCTCGAAAACTGTGACCTGGGAGCCATGTTAGCAGACTGTTATCCACATCTCAACGTTCCCACACAATTCGAGAACGTTTGGGGAGACAGAGCTTACTACAATTACAACACCTCCAAGTTGAGAGCTCTAGGTTTCGAATTCAAGAGCATACAAGAGATGTTCCAGGATTGTATTGAATCGCTTAAAGAGCAGGGCCACATATAG___TTAAAACTATAGAAACCCAGAGAAGGAAAACAAAAATTCATCATTAGGAGGCAACAAACAATTCATAACCTGCCTTATTTATAATAATATTTTATTATTATGAGAACTTTTCTCGATTC

Fln Alignment:

Contig17239___ITNSKGLVCVTGAAGYLASWLIKRLLQRGYHVRGTVRDPGNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGNEKKMAHLWKLDGAKERLQLMKADLMDEGSFDEVIRGCHGVFHTASPVVGVKSDPKAEIVDPAVRGTLNVLRSCKXXXXXXXXXXXXXXXXXXXRDDFGPSVPLDESSWSSVELCEKLQIWYALAKTLAEKAAWDFAEENNLDMVAVLPTFVIGPSLPPSLCSTASDVLGLLKGETQKFTLHGRMGYVHIDDVAGCHILVYEEPPAKGRYICSSAVLENCDLGAMLADCYPHLNVPTQFENVWGDRAYYNYNTSKLRALGFEFKSIQEMFQDCIESLKEQGHI
B9SC77_______________MNQSKGKVCVTGASGFLASWLIKRLLLSGYDVIGTVRDPGNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGNEKKLAHLWKLEGAKERLQLVKADLMEMGSFDDAIFGCHGVFHTASPVIKPTTDPKAEILKPAVEGTLNVLSSCKKNPFMKRMVLTSSSSTIRAREDIDPKVPLDESSWSSVELCERLQIWYVLSKTLAEKAAWEFCNDNGIDLVTVLPSFVIGPSLPPDLCSTVSDVLGLLKGETDKFQWHGRMGYVHIDDVALCHILVYEQENARGRYICSSTILDNNELVSFLSARYPSLSIPKRFEQL--DRPYYEFNTSKLKSLGFKFKSIHQMFDDCIASLIEQGHL

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
434		10		90	0.90298
435	90	10			0.90298
436	90	10			0.90298
455			11	88	0.923564
459		88		11	0.923564
460	88			11	0.923564
461	88			11	0.923564
462	88			11	0.923564
463		88		11	0.923564
466	88	11			0.923564
467	11		88		0.923564
468	11		88		0.923564
470		88	11		0.923564
471	88			11	0.923564
1093	75	25			0.996473
1094		25		75	0.996473
1095		50	50		1.0
1096	25	25	50		0.995533
1097		25		75	0.996473
1098	66	33			0.997452
1100		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain