SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene17220

Length: 1364 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene17220 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	unknown [Picea sitchensis]	-	-	93%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1M3

Fln msg:

Fln protein: MAVRRQPLAILQDENAEINRGKSTVTKSVGLKAQQPDLSDRITLSNITNKPKPRSSGLVSPIAPRKTENHTKGAFGGTFSSAKNGRAGVAPRTALGDITNGVESCKAPASVVKQKKARGKNAKIGPNPRCELTEEEKQKANAWAREGIERVQFSGKDMEVLKAKIAEEEVNSRVAQALSYRTEIPCFLPRAVQKDSPVVTDFLELDPVEDLCKKGDSPSNDIDMELEAVDYDDAFLECLEILQNASKNWPGIMEDCVY*

Protein Length: 260

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCTTTTCTCTCACTCACTCTCACATGAACGGCAACCGAACAATCTGCTCTGAAACATAACTCGCCCATCGATAGCTCAATATCAGTTTTCACAGCAAAATCTTTCAAAATCTTTCAATTCTTACTACTGCAGTCTTTAGCGCTCGCACATACTGATTATCATTCACCAACCAACAGAA_-_ATGGCGGTCAGAAGGCAACCGCTTGCCATCCTCCAGGACGAAAACGCCGAGATCAACAGAGGCAAAAGCACTGTTACCAAATCTGTCGGCCTCAAGGCGCAGCAACCAGATTTATCTGATCGGATCACTCTGTCCAACATCACGAACAAGCCGAAACCTCGAAGTTCTGGACTGGTGAGCCCTATCGCTCCTCGCAAGACGGAGAATCATACTAAGGGGGCATTCGGTGGGACATTTTCTTCTGCTAAGAATGGGCGCGCAGGGGTTGCACCTCGAACTGCTCTCGGTGATATTACGAATGGGGTCGAATCCTGTAAGGCTCCAGCCTCTGTGGTTAAACAGAAGAAGGCGCGGGGGAAGAACGCGAAAATAGGTCCTAATCCGAGATGTGAACTAACGGAGGAGGAAAAGCAGAAGGCCAACGCTTGGGCTCGAGAAGGAATCGAGAGGGTTCAGTTTAGTGGTAAAGACATGGAGGTGTTGAAGGCAAAGATCGCAGAAGAAGAGGTCAACAGCCGAGTAGCACAGGCATTGAGCTACAGAACGGAGATACCATGTTTTCTGCCTCGTGCGGTTCAAAAGGATTCCCCTGTAGTTACAGATTTTTTGGAGTTAGATCCAGTGGAAGATCTTTGTAAGAAGGGAGATTCTCCTTCCAATGACATAGACATGGAGCTGGAAGCTGTGGATTATGATGATGCTTTCCTGGAGTGCCTTGAGATTTTGCAGAACGCCTCCAAAAACTGGCCTGGTATTATGGAGGATTGCGTCTATTGA___GATGCAGAAGTCGTTACCAATTATCCTTTTTGACATCTCTTCTAGATAGATGGTGGGTTCAATGACAGTTGCACCGCCATATGGTTGTAATAGGAACAGGGGTTTATGAATGGCCTATATAGTATTTGTGATTGCACTTATTGTTTCTACTGTTTATAAATACATAACAGCATATGAAGTTATTTCTTTTGTAGGGATCATAACATGACATGAAATGGAAGTATTTTTTTAAGGGATCATAACATGATATGAAATGGAAGTAGTTTTTCAAGGGATTGCTTGTGGGATAGCATGGTTATGACAGAGATTTATTTTAAGAGGTTGAAAATGTAATTGATATTGTTGTTCAAAGAATGTAGGTCTGAAAAAGATCAGCTTTTAACTG

Fln Alignment:

Contig17220___MAVRRQPLAILQDENAEINRGKSTVTKSVGLKAQQPDLSDRITLSNITNKPKPRSSGLVSPIAPRKTENHTKGAFGGTFSSAKNGRAGVAPRTALGDITNGVESCKAPASVVKQKKARGKNAKIGPNPRCELTEEEKQKANAWAREGIERVQFSGKDMEVLKAKIAEEEVNSRVAQALSYRTEIPCFLPRAVQKDSPVVTDFLELDPVEDLCKKGDSPSNDIDMELEAVDYDDAFLECLEILQNASKNWPGIMEDCVY
A9P1M3_______________MAVRRQPLAVLQDENAEINRGKSTVTKSVGLKTQQPDLSDRITLANITNKPKPRNSGLVSPIAPRKAENHTKGGFGGSFSSAKIGRAGILPRTALGDITNGVESCKAPDTAVKRKKVQGKNVKMGPNPRYELTEEEKQKADAWAREGIERVQFSGKDMEALKEKIAKEEVNSRVTQALSYRTEIPCFLPRALQKDSSIITDFLELDPVEDLCKKGDSPCD--DMKLEDVDYDDSFLECLEILQNASKNWPGIMEDCVY

SNPs (tot: 61)

Position	A %	C %	G %	T %	Probability
523			9	90	1.0
524	6	90			0.996531
525			6	93	0.99903
530	90		9		1.0
531	90	9			1.0
532		9	90		1.0
534	9		6	84	0.999999
535		84	9	6	0.999999
536		3	12	84	1.0
537	6	3		90	0.996531
539	6	93			0.99903
540	93	6			0.99903
542	6	3	9	81	0.999999
543	6	3	90		0.997952
545	93		6		0.999364
548	6	3		89	0.998304
549	93	6			0.999453
552			6	93	0.999453
562		84	3	7	0.99801
563			7	92	0.999664
565	7			92	0.999664
566	92	7			0.999664
569		15		84	1.0
575			82	17	1.0
576		17	82		1.0
578	81	18			1.0
579			18	81	1.0
580	18	81			1.0
582			18	81	1.0
612	82		17		1.0
613	17			82	1.0
615	17			82	1.0
619			16	83	1.0
622	16			83	1.0
623		16	83		1.0
624			16	83	1.0
792	83		16		0.999991
818		87		12	0.992554
834			85	14	0.993533
848	83	16			0.994512
852		16	83		0.994512
983	25		75		0.996473
986		75		25	0.996473
1013		33		66	0.997452
1258		5	94		0.997984
1315		81	18		1.0
1326	6	18	62		1.0
1327	87	12			0.992554
1328		33	66		1.0
1329	20	20			0.99255
1330		20		40	1.0
1331		20	80		0.995493
1332	80	20			0.995493
1333	20	20	60		0.99255
1335			80	20	0.995493
1336	80	20			0.995493
1337	80	20			0.995493
1341		75	25		0.996473
1343		25	75		0.996473
1345		25	75		0.996473
1350	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain