SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene17208

Length: 2988 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene17208
CGTCGTGACCTTGGCTGTCATGGGGATTTTCACAATGGTGGGATCGGATGAAAAACTTGTCTAAGGGAAATTGCAGGGGAGTTGGGTTTGTCCTGACCTGCTCTGCCAAAGATTCTCTACAAAATGCAAATTATACCCACAAATAAACGACTCCAAATTAGTAATTCGGTAGTGGTATATACACCCTAGATCCTTCGTCTTGTCTTATCTGACTATACCCCATGCTAATTCTCAATAAATGACTGGATTTCATCCAGTCTCATCTCATTGCTTGCAGCCACGCCTGCAACATCCATTTCATTTCTTCTGCAGAATTTCTGCAGCAATTCAACTGTAAAGCTATCAATAGCAGCTAAAAGCAACAGGGATTCACTCTGCAAAGCTGTTTTCGTTTCATTTGGACCTCTGATTTGAAGTGGGTAGTTGACAAGATGGCTGCTGGAACAATTCCTGCTTCGTTCTCTGGTTTGAAGAAAACCGATTCCTTGCCAGGCTGCTTGCAGAGTACCCATGCTAGAAAAGGCTTTGCTATGCATAACTTTCAGAATCCGAGGTCATCGTCATTCCGGATAAGGTTTACTGGGGTCAGGAACTCATCCTCAGACATTGCAGAAATGAAGCCAGCTTCTGAGGGCAGTCCACTTTTGGTTCCCAGGCAGAAGTATTGTGAATCCATATACAAGACAATACGCAGAAAAACAAGAACAGTGATGGTTGGCAATGTCCCACTTGGGAGCGAACATCCTATCAGGGTTCAAACAATGACTACTACTGATACAAAGGATGTTCTTGGTACCGTAGAACAGGTCATGCGAATAGCCGATAAAGGAGCAGATCTTGTTCGAATCACTGTTCAGGGAAAAAAAGAAGCAGATGCTTGCCATGACATTAAAAATACCCTTGTACAGAAGGGCTATGATATTCCACTTGTGGCAGACATCCATTTTGCTCCTTCAGTTGCATTGCGTGTTGCAGAATATTTTGATAAGATCCGCGTTAATCCTGGAAATTTTGCTGACAGGCGTGCCCAATTTCAGAAACTAGAATACACAGAGGAAGACTATCAGAAGGAGCTTGAACACATTGAAGAGGTTTTCACACCATTGGTGGAGAAATGCAAGAAGTACGGAAGGGCAATGCGAATTGGCACAAACCATGGAAGTCTTTCCGATCGTACTATGAGTTACTATGGTGATTCTCCCAGGGGTATGGTGGAATCAGCATTTGAATTTGCACGCATTTGCCGGAAGTTGGATTTTCATAATTTTGTGTTTTCAATGAAAGCGAGCAATCCTGTAGTCATGGTTCAGGCATACCGTTTACTTGTTGCGGAGATGTATGTCCAAGGATGGGATTATCCATTGCATTTAGGAGTTACTGAAGCTGGTGAAGGTGAAGATGGACGCATGAAGTCTGCAATTGGCATTGGAACACTTTTGCAGGATGGTTTGGGTGATACTATTCGAGTTTCCCTTACAGAACCTCCAGAAGAGGAGATTAATCCCTGTAGAAGACTTGCAAATCTTGGGATGCAAGCTGCAAAGCTAGGGAAAGGAGTGGCTCCTTTTGAGGAGAAGCATCGTCATTACTTTACTTTCCAACGCAGGACTGGCCAGCTTCCAGTACAGAAGGAGGGTGATGAGGTGGATTATAGAGGAGTTCTGCATCGTGATGGTTCTGTTCTAATGTCAGTGTCTCTTGACCAGTTGAAGACACCAGAGATTTTGTACAAATCACTGGCAACAAAGCTTATTGTCGGCATGCCCTATAAGGATCTTGCAACAGTGGACACAATATTGTTGAGGGAACTTCCCCCGGCAGAGGACACCGAAGCGAGGCTGGCGATTAAAAGGCTTATAGACATAAGTATGGGCGTTTTGACACCTTTATCAGAGCAACTTACCAAACCTTTGCCAAACGCCATGGTCCTTGTAAATTTGAAGGAACTTTCAACGGGCGCTCACAAGCTTCTACCAGCAGGTACACGTTTGGCTGTAACTCTTCGAGGAGATGAAACATACGAGGAATTGGATGTCATCAAGAGTGTGGATGCCACAATGATTCTCTTAAATCTGCCTAGAGAAGAAGAGAAAGTTAACCGTGTCCATGCATCTCGAAGATTATTTGAGTACTTGCAAGAAAATGCACTCAACTTCCCCGTTATTCATCACATACAGTTTCCTGAAGGAACTCACAGGGATGATCTAGTCATCAGTGCAGGCAGTGAGGCAGGTGCTCTCCTTGTCGATGGTCTTGGTGATGGCTTAATGTTGGAGGCTTCAGACCAAGACTTCGATTTTCTTCGTAACACATCGTTTGGACTGCTCCAAGGATGCAGGATGCGCAATACAAAAACGGAGTATGTATCATGCCCATCATGTGGCCGCACTCTGTTTGACCTCCAAGAAATAAGTGCAGAGATTCGGGCGAAAACACAGCATCTTCCTGGTGTTTCGATTGCTATCATGGGCTGCATTGTGAATGGTCCTGGAGAGATGGCAGATGCAGACTTTGGATATGTTGGTGGGTCACCAGGAAAGATTGATCTCTATGTTGGAAAGGAAGTTGTCAAAAGAGGTATAGCAATGGAGCAAGCATGTGATGCTTTAATTCAGTTGATTAAGGACTATGGGCGATGGGTCGATCCTCCTGCTGAAGAATAATTTGGGACTGCTGCCCGTCTTAAATGTTTCAGTCAAGCTATTTAACATATCAGCATCGTAAGTACAACCTGTGTTAGAAGGCAACAAATTACAGAGGGGATCACTGGGCTCTAGATTAGTGTATGGTTCTCCTGGAGCTATGGGTTTGTTTAAAAGGCAATGGCCATCTCAGGGGAAGATATGGCGACTGAGGCAAAGACATTATATATCTTTTCTCTTCGAAAAGAGAGTACATAATGACAGTTTGTAAGGCCATTCTAGCAAAATAAGTGGAGTGACATGTTTCAAAAATAATTATCTTACAATCGAGCATTCAAAGCATTCC

Ace file of the UniGene sp_v2.0_unigene17208 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	(E)-4-hydroxy-3-methyl-but-2-enyl diphosphate synthase n=1 Tax=Ginkgo biloba RepID=A9CBE3_GINBI	-	-	87%
FL-Next	tr=(E)-4-hydroxy-3-methyl-but-2-enyl diphosphate synthase; Ginkgo biloba (Ginkgo) (Maidenhair tree).	-	-	89%
Blast2go	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase.	EC:1.17.7.1	-	0.0	89%

Source	KEGGs	Term	Identity
Blast2go	Terpenoid backbone biosynthesis	00900	89%
Blast2go	Biosynthesis of terpenoids and steroids	01062	89%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	89%
Blast2go	Biosynthesis of plant hormones	01070	89%
Blast2go	Metabolic pathways	01100	89%
Blast2go	Biosynthesis of secondary metabolites	01110	89%

Source	GOs	Term	Type	Identity
Blast2go	systemic acquired resistance, salicylic acid mediated signaling pathway	GO:0009862	Biological Process	89%
Blast2go	response to bacterium	GO:0009617	Biological Process	89%
Blast2go	isoprenoid biosynthetic process	GO:0008299	Biological Process	89%
Blast2go	4 iron, 4 sulfur cluster binding	GO:0051539	Molecular Function	89%
Blast2go	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	GO:0046429	Molecular Function	89%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	89%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, atypical	IPR017178	-	0.0	-
Sma3	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type	IPR004588	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A9CBE3

Fln msg:

Fln protein: MAAGTIPASFSGLKKTDSLPGCLQSTHARKGFAMHNFQNPRSSSFRIRFTGVRNSSSDIAEMKPASEGSPLLVPRQKYCESIYKTIRRKTRTVMVGNVPLGSEHPIRVQTMTTTDTKDVLGTVEQVMRIADKGADLVRITVQGKKEADACHDIKNTLVQKGYDIPLVADIHFAPSVALRVAEYFDKIRVNPGNFADRRAQFQKLEYTEEDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTNHGSLSDRTMSYYGDSPRGMVESAFEFARICRKLDFHNFVFSMKASNPVVMVQAYRLLVAEMYVQGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEEEINPCRRLANLGMQAAKLGKGVAPFEEKHRHYFTFQRRTGQLPVQKEGDEVDYRGVLHRDGSVLMSVSLDQLKTPEILYKSLATKLIVGMPYKDLATVDTILLRELPPAEDTEARLAIKRLIDISMGVLTPLSEQLTKPLPNAMVLVNLKELSTGAHKLLPAGTRLAVTLRGDETYEELDVIKSVDATMILLNLPREEEKVNRVHASRRLFEYLQENALNFPVIHHIQFPEGTHRDDLVISAGSEAGALLVDGLGDGLMLEASDQDFDFLRNTSFGLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIRAKTQHLPGVSIAIMGCIVNGPGEMADADFGYVGGSPGKIDLYVGKEVVKRGIAMEQACDALIQLIKDYGRWVDPPAEE*

Protein Length: 745

Fln nts: CGTCGTGACCTTGGCTGTCATGGGGATTTTCACAATGGTGGGATCGGATGAAAAACTTGTCTAAGGGAAATTGCAGGGGAGTTGGGTTTGTCCTGACCTGCTCTGCCAAAGATTCTCTACAAAATGCAAATTATACCCACAAATAAACGACTCCAAATTAGTAATTCGGTAGTGGTATATACACCCTAGATCCTTCGTCTTGTCTTATCTGACTATACCCCATGCTAATTCTCAATAAATGACTGGATTTCATCCAGTCTCATCTCATTGCTTGCAGCCACGCCTGCAACATCCATTTCATTTCTTCTGCAGAATTTCTGCAGCAATTCAACTGTAAAGCTATCAATAGCAGCTAAAAGCAACAGGGATTCACTCTGCAAAGCTGTTTTCGTTTCATTTGGACCTCTGATTTGAAGTGGGTAGTTGACAAG_-_ATGGCTGCTGGAACAATTCCTGCTTCGTTCTCTGGTTTGAAGAAAACCGATTCCTTGCCAGGCTGCTTGCAGAGTACCCATGCTAGAAAAGGCTTTGCTATGCATAACTTTCAGAATCCGAGGTCATCGTCATTCCGGATAAGGTTTACTGGGGTCAGGAACTCATCCTCAGACATTGCAGAAATGAAGCCAGCTTCTGAGGGCAGTCCACTTTTGGTTCCCAGGCAGAAGTATTGTGAATCCATATACAAGACAATACGCAGAAAAACAAGAACAGTGATGGTTGGCAATGTCCCACTTGGGAGCGAACATCCTATCAGGGTTCAAACAATGACTACTACTGATACAAAGGATGTTCTTGGTACCGTAGAACAGGTCATGCGAATAGCCGATAAAGGAGCAGATCTTGTTCGAATCACTGTTCAGGGAAAAAAAGAAGCAGATGCTTGCCATGACATTAAAAATACCCTTGTACAGAAGGGCTATGATATTCCACTTGTGGCAGACATCCATTTTGCTCCTTCAGTTGCATTGCGTGTTGCAGAATATTTTGATAAGATCCGCGTTAATCCTGGAAATTTTGCTGACAGGCGTGCCCAATTTCAGAAACTAGAATACACAGAGGAAGACTATCAGAAGGAGCTTGAACACATTGAAGAGGTTTTCACACCATTGGTGGAGAAATGCAAGAAGTACGGAAGGGCAATGCGAATTGGCACAAACCATGGAAGTCTTTCCGATCGTACTATGAGTTACTATGGTGATTCTCCCAGGGGTATGGTGGAATCAGCATTTGAATTTGCACGCATTTGCCGGAAGTTGGATTTTCATAATTTTGTGTTTTCAATGAAAGCGAGCAATCCTGTAGTCATGGTTCAGGCATACCGTTTACTTGTTGCGGAGATGTATGTCCAAGGATGGGATTATCCATTGCATTTAGGAGTTACTGAAGCTGGTGAAGGTGAAGATGGACGCATGAAGTCTGCAATTGGCATTGGAACACTTTTGCAGGATGGTTTGGGTGATACTATTCGAGTTTCCCTTACAGAACCTCCAGAAGAGGAGATTAATCCCTGTAGAAGACTTGCAAATCTTGGGATGCAAGCTGCAAAGCTAGGGAAAGGAGTGGCTCCTTTTGAGGAGAAGCATCGTCATTACTTTACTTTCCAACGCAGGACTGGCCAGCTTCCAGTACAGAAGGAGGGTGATGAGGTGGATTATAGAGGAGTTCTGCATCGTGATGGTTCTGTTCTAATGTCAGTGTCTCTTGACCAGTTGAAGACACCAGAGATTTTGTACAAATCACTGGCAACAAAGCTTATTGTCGGCATGCCCTATAAGGATCTTGCAACAGTGGACACAATATTGTTGAGGGAACTTCCCCCGGCAGAGGACACCGAAGCGAGGCTGGCGATTAAAAGGCTTATAGACATAAGTATGGGCGTTTTGACACCTTTATCAGAGCAACTTACCAAACCTTTGCCAAACGCCATGGTCCTTGTAAATTTGAAGGAACTTTCAACGGGCGCTCACAAGCTTCTACCAGCAGGTACACGTTTGGCTGTAACTCTTCGAGGAGATGAAACATACGAGGAATTGGATGTCATCAAGAGTGTGGATGCCACAATGATTCTCTTAAATCTGCCTAGAGAAGAAGAGAAAGTTAACCGTGTCCATGCATCTCGAAGATTATTTGAGTACTTGCAAGAAAATGCACTCAACTTCCCCGTTATTCATCACATACAGTTTCCTGAAGGAACTCACAGGGATGATCTAGTCATCAGTGCAGGCAGTGAGGCAGGTGCTCTCCTTGTCGATGGTCTTGGTGATGGCTTAATGTTGGAGGCTTCAGACCAAGACTTCGATTTTCTTCGTAACACATCGTTTGGACTGCTCCAAGGATGCAGGATGCGCAATACAAAAACGGAGTATGTATCATGCCCATCATGTGGCCGCACTCTGTTTGACCTCCAAGAAATAAGTGCAGAGATTCGGGCGAAAACACAGCATCTTCCTGGTGTTTCGATTGCTATCATGGGCTGCATTGTGAATGGTCCTGGAGAGATGGCAGATGCAGACTTTGGATATGTTGGTGGGTCACCAGGAAAGATTGATCTCTATGTTGGAAAGGAAGTTGTCAAAAGAGGTATAGCAATGGAGCAAGCATGTGATGCTTTAATTCAGTTGATTAAGGACTATGGGCGATGGGTCGATCCTCCTGCTGAAGAATAA___TTTGGGACTGCTGCCCGTCTTAAATGTTTCAGTCAAGCTATTTAACATATCAGCATCGTAAGTACAACCTGTGTTAGAAGGCAACAAATTACAGAGGGGATCACTGGGCTCTAGATTAGTGTATGGTTCTCCTGGAGCTATGGGTTTGTTTAAAAGGCAATGGCCATCTCAGGGGAAGATATGGCGACTGAGGCAAAGACATTATATATCTTTTCTCTTCGAAAAGAGAGTACATAATGACAGTTTGTAAGGCCATTCTAGCAAAATAAGTGGAGTGACATGTTTCAAAAATAATTATCTTACAATCGAGCATTCAAAGCATTCC

Fln Alignment:

Contig17208___MAAGTIPASFSGLKKTDSLPGCLQSTHARKGFAMHNFQNPRSSSFRIRFTGVRNSSSDIAEMKPASEGSPLLVPRQKYCESIYKTIRRKTRTVMVGNVPLGSEHPIRVQTMTTTDTKDVLGTVEQVMRIADKGADLVRITVQGKKEADACHDIKNTLVQKGYDIPLVADIHFAPSVALRVAEYFDKIRVNPGNFADRRAQFQKLEYTEEDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTNHGSLSDRTMSYYGDSPRGMVESAFEFARICRKLDFHNFVFSMKASNPVVMVQAYRLLVAEMYVQGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEEEINPCRRLANLGMQAAKLGKGVAPFEEKHRHYFTFQRRTGQLPVQKEGDEVDYRGVLHRDGSVLMSVSLDQLKTPEILYKSLATKLIVGMPYKDLATVDTILLRELPPAEDTEARLAIKRLIDISMGVLTPLSEQLTKPLPNAMVLVNLKELSTGAHKLLPAGTRLAVTLRGDETYEELDVIKSVDATMILLNLPREEEKVNRVHASRRLFEYLQENALNFPVIHHIQFPEGTHRDDLVISAGSEXXXXXXXXXXXXLMLEASDQDFDFLRNTSFGLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIRAKTQHLPGVSIAIMGCIVNGPGEMADADFGYVGGSPGKIDLYVGKEVVKRGIAMEQACDALIQLIKDYGRWVDPPAEE
A9CBE3_______________MAAGTIPASFSGLKQTDSLPGCLEKINSTKNFRISNCQTSRSC--RKRLNVVRNSSSDIAEMQRASEGSPLLVPRQKYCESIYKTVRRRTRTMMAGNVALGSEHPIRIQTMTTTDTKDVSATVEQVMRIADRGADLVRITVQGKKEADACYDIKNTLVQKDYNIPLVADIHFAPSVAMRVAECFDKIRVNPGNFADRRAQFQKLEYTEEDYQKELEHIEEVFGPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICQKLDFHNFVFSMKASNPVVMVQAYRLLVAEMYVQGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEEEIDPCRRLANLGMQAAKLQKGVAPFEEKHRYYFDFQRRTGQLPVQKEGEEVDYRGVLHRDGSVLMSVSLDQLKTPELLYKSLATKLIVGMPFKDLATVDTILLRELPPVDDSEARLAIKRLVDVSMGVLTPLSEQLTRPLQHAMVLVNLKELSTGAHELLPAGTRLAVSLRGDEAYEDLDLLKSVDLTMILLNLPQTEKKISRVHASRRLFEYLQETGLNFPVIHHLEFPAGTHRDDLVINAGSEAGALLVDGLGDGLLLEAPDQDFDFLRNTSFGLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTAHLPGVSIAIMGCIVNGPGEMADADFGYVGGSPGKIDLYVGKEVVKRGIAMDQATDALIQLIKDHGRWVDPPVEE

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
548	97		2		0.967822
560		65	2	28	1.0
631	4	95			0.995881
667			94	5	0.997984
679		6		93	0.999153
680	6		93		0.99903
866		88		11	0.923564
931	50			50	1.0
932		50		50	1.0
933	50		50		1.0
935			50	50	1.0
1566	16	83			0.994512
1862	62		37		1.0
2446		11	88		0.923564
2447	88	11			0.923564
2448	88	11			0.923564
2466		66	33		1.0
2477	80		20		0.995493
2484		80	20		0.995493
2493	20	80			0.995493
2494	80			20	0.995493
2496		80	20		0.995493
2547		25	75		0.996473
2700	33			66	0.997452
2728			66	33	0.997452
2763	66		33		0.997452
2829	33			66	0.997452
2841		14	85		0.993533
2842		14		85	0.993533
2843		14		85	0.993533
2844		14		85	0.993533
2847	14			85	0.993533
2926	25			75	0.996473
2967		66		33	0.997452
2968		66	33		0.997452
2969	33	66			0.997452
2970	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain