SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene17135

Length: 1937 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene17135 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG1011 Predicted hydrolase (HAD superfamily)	-	-	1.0e-15	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	protein	-	-	0.0	70%

Source	InterPros	Term	Type	Identity
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	HAD-superfamily hydrolase, subfamily IA, variant 3	IPR006402	-	-
Sma3	Pyrimidine 5-nucleotidase	IPR010237	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0Q9

Fln msg:

Fln protein: MEAVQSSVEAKMPLYDCLLFDLDDTLYPLSTGLQTTCRQNIEDYMVEVLKIDKSEVPSMCVDLHKSHGTTMAGLKAQGYEIDNDNFHSIVHGRLPYENLRPDPVLRSLLLSMPQRKIIFTNSDKVHATKTLSRLGLEDCFEGVICFETLNPPQQIVDNSNSLKAVNPITQTTGNEDDLETWFEALNSSEQIVDDTNSLKTVNPCTQTTGNEEDLETGITSHGKADYSDFLETINSDNSTDFKSPILCKPSLEAIELALKIANADPKRTIFFDDSVRNIAAGKAAGLHTVIVGRSDRTEGADFALESIHNIKEAIPEIWENEEKSEIEVCPCSGITVETVVVA*

Protein Length: 344

Fln nts: ATGGGAATCAATTTCATCAAAGTGGCCTTGACTGTAAGTCTGAGCACCCAATTCAGTCAAATATGCATTAATTAATTGTTTAATGGATGTGATGCCAAGGTTTTTGTGGGATTTTACGGCCCTTTTTGACGAATGGGCTCTTGGAGTTCACAGTCCGACTCCATGAGATTATCGAAAAGTCGCAATGATCCTGAGTATGGCCACAGGGTGTCGTGCAAGCCTATTAATGTTTGGTAGTTTTCTCATCCTACACATGTGTTCATAGTCATATTCCCCATTATTATTATTCTACTTCTGCTGCTCGGGGAATTTTCTGAGTATTATACCTCTTTTTGCCATAGCAAGTGTCCTGCTCACCATTCCTTCTCAGTTAAGGGCTTGTGTGTGTGGCCTATATATACATATTCCTCATTTCATATCGTGTATACGTTCGTTGTTTTGTATTGTAATTCTGAAACTTATAATTTGTTTTGGGTTTTACACTTCAGTCTGTGTTGGGTTCTTTCATTTCCGCGGCACAGGAGGAGGATCCCATCAATATCTGATTAATT_-_ATGGAGGCTGTACAAAGCTCTGTGGAAGCTAAGATGCCACTATATGACTGTCTTCTGTTTGATTTGGATGATACTCTGTATCCTCTAAGTACTGGACTTCAAACAACCTGCCGTCAGAATATTGAAGATTACATGGTTGAAGTTCTTAAAATTGATAAAAGCGAAGTTCCATCTATGTGCGTTGATCTTCACAAGAGTCATGGGACTACGATGGCTGGACTTAAGGCACAGGGCTATGAGATTGATAATGATAACTTTCATAGTATTGTGCATGGTAGATTGCCTTATGAGAACCTTAGACCTGATCCAGTGCTGAGGAGTTTGTTACTGAGTATGCCACAACGGAAAATAATATTCACCAATTCTGACAAAGTTCATGCTACAAAAACCTTAAGTAGGCTGGGATTGGAAGATTGTTTTGAAGGTGTAATATGCTTTGAAACACTGAATCCCCCTCAACAAATTGTTGATAATAGTAATAGCTTGAAAGCTGTCAACCCAATTACACAAACAACCGGTAATGAAGATGACTTGGAAACCTGGTTTGAAGCACTGAATAGCTCTGAACAAATTGTTGATGATACTAATAGCTTGAAGACTGTCAACCCATGTACGCAAACTACTGGTAATGAAGAAGACTTGGAAACCGGCATTACTTCTCATGGAAAAGCTGATTATAGTGATTTCTTGGAAACCATAAATAGTGATAATTCAACAGATTTCAAGTCTCCTATTCTTTGCAAGCCTTCCTTGGAGGCAATAGAATTGGCATTGAAAATAGCAAATGCAGATCCAAAAAGGACGATTTTCTTTGACGACAGTGTACGTAACATAGCAGCGGGCAAAGCTGCAGGGTTGCATACTGTTATAGTTGGCAGATCTGACCGAACAGAAGGAGCAGATTTTGCTCTCGAAAGCATTCACAACATAAAGGAAGCCATACCTGAGATTTGGGAAAATGAAGAAAAATCTGAAATTGAAGTATGTCCATGCTCTGGAATTACCGTGGAAACTGTAGTTGTTGCATGA___AATGTATGACTTCACATTAGGATAAAATGTTTGCACTGTTAGCATATGGGGCTTTTAATTGATGGTGAATGGGTGTACTGTGAAGACACTCATTGCAAAAAAGTCATTGGTTTAAATCCCTGTGGGTAAGCCCAAAAGAAACTATTAGCACCGTAGTTTTTCTATATTTGACAACACAACTGAACCCTAGTAGCCCTGCTGTCTTTTAGGGTCCAGATTGTTACAATAACCTCGAACAATGTCTATGTTATAGAGTCCAGAGGGTTTCAAGAGCCTCTAACAATATCTATGTTATATGGTAAACATTACTATAATTTCTATTGATAATAACTATCTATCTGTTTCTAAAGGTTTTCC

Fln Alignment:

Contig17135___MEAVQSSVEAKMPLYDCLLFDLDDTLYPLSTGLQTTCRQNIEDYMVEVLKIDKSEVPSMCVDLHKSHGTTMAGLKAQGYEIDNDNFHSIVHGRLPYENLRPDPVLRSLLLSMPQRKIIFTNSDKVHATKTLSRLGLEDCFEGVICFETLNPPQQIVDNSNSLKAVNPITQTTGNEDDLETWFEALNSSEQIVDDTNSLKTVNPCTQTTGNEEDLETGITSHGKADYSDFLETINSDNSTDFKSPILCKPSLEAIELALKIANADPKRTIFFDDSVRNIAAGKAAGLHTVIVGRSDRTEGADFALESIHNIKEA
A9P0Q9_______________MEGVERSGEAKMPQYDCLLFDLDDTLYPLSTGIQAACRKNIEDYMVEVLKIDESKVPSMCVDLYKSHGTTMAGLNALGYEFDNDDFHSFVHGRLPYDNLRPDPVLRSLLLSMPQRKIIFTNSDKVHATKTLSRLGLEDCFEGVICFETLNPSQQIVDNSNSLKTINQYTETIGDEDDLETWFETLNHSQQIVDDSNSLKTVKPCMQATGDEDDLETIVTSLGKADYCNGLETINSDNSTNSKSAILCKPSLEAMELALKIANADPKRTIFFDDSVRNIAAGKAAGLHTVLVGSSVRTEGADFALESIHNIKEA

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
461		3		96	0.982166
492		96		3	0.986325
493			3	96	0.986325
494	3			96	0.986325
495		96	3		0.986325
499	3			96	0.987242
501	3		96		0.987242
503		3		96	0.987242
507	96		3		0.987242
510		3		96	0.988113
512	3	96			0.988113
531	96		3		0.990463
555		23		76	1.0
589			6	93	0.99903
591		6		93	0.99903
592	6			93	0.999153
596	3			90	0.997073
603			6	93	0.999364
682	87	12			0.992554
684		12		87	0.992554
1406	50		50		1.0
1435	88		11		0.923564
1439		87		12	0.992554
1440		87	12		0.992554
1441	12	87			0.992554
1442	87		12		0.992554
1443	87			12	0.992554
1444		87	12		0.992554
1451		12		87	0.992554
1452	12		87		0.992554
1454	87		12		0.992554
1458		12	12	75	0.975346
1460	85	14			0.993533
1461	85		14		0.993533
1465		57	42		1.0
1511		40		60	1.0
1516	66	33			0.997452
1518		33	66		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
1650	1661	AAT AAT AAT AAT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain