SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene17134

Length: 1291 nt

Origin of reads: Inia v1 Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene17134

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Rab family GTPase n=3 Tax=Selaginella moellendorffii RepID=D8RE14_SELML	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	rab family gtpase	-	-	88%

Source	InterPros	Term	Type	Identity
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	GCK	IPR012891	-	-
Sma3		IPR013753	-	-
Sma3		IPR015595	-	-
Sma3	DNA-directed DNA polymerase, family A, conserved site	IPR019760	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZD1

Fln msg:

Fln protein: MAYKTEEDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFAARSVNVDGKSIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRHVTFENVERWYKELKDHTDVNIVVMLVGNKSDLLHLRAVSIEEGKSFAERESLYFMETSALDSTNVENSFTQVLTQIYRIVSKRSLDTAEEALSTLPGKGQSISVNGKDEFTTKKAGCC*

Protein Length: 217

Fln nts: ATGGGGACTTTCCGGTTTGTGTCTCTGCGATGCATTGAACCCAAATCTCGACCAAATATTAACAGATTTCTGTTCGGAAACGTAGACAGGCAGACAAATTTCCCTCTTCGTCGCCACCACAAGGAGCAGAGACTTAAATTCTTGGCGGGAGGTGTGACAAGCTTCGGAATATTCCAGAGGAAGAACCGGAATATAAAAGTGAACCAACATTCCCATTTTGAATTTTTCCTTGCCAGTTCAGCAATTCGAGAAGAATGATGGCCCTCACTTAAATCTTTGGCGCGCTCTATAGCTGCCACACCGACTTTCCGAGTTCCATCTTTGATAAAACGTGGCCAATTTTTCTATATTTTCAACGTTTTGGGATTGTCCGCATTGTCGTA_-_ATGGCTTATAAAACGGAGGAGGACTACGATTATTTGTTTAAAGTTGTGCTAATCGGAGACTCAGGGGTTGGGAAGTCCAATTTACTTTCGAGATTTACTCGTAATGAGTTCAGTTTGGAGTCCAAATCAACAATAGGAGTGGAGTTTGCGGCACGCAGCGTCAACGTGGATGGGAAAAGTATCAAAGCCCAAATCTGGGATACAGCCGGTCAAGAAAGGTACAGGGCCATCACAAGTGCATATTACCGTGGAGCTGTGGGTGCCCTTCTGGTGTATGACATTACTCGCCATGTGACATTTGAGAATGTTGAGAGGTGGTATAAAGAGCTCAAGGATCATACAGATGTCAATATTGTGGTGATGCTAGTGGGAAACAAGTCTGATTTACTGCATCTGAGAGCTGTTTCTATTGAAGAAGGGAAATCGTTTGCGGAGAGAGAGAGCCTCTACTTCATGGAAACATCTGCATTGGACTCAACAAATGTGGAGAACTCCTTCACACAGGTGTTAACGCAGATTTATAGAATAGTGAGTAAAAGGAGCTTGGATACTGCAGAGGAAGCTTTATCAACACTGCCAGGCAAGGGTCAGTCTATTTCTGTAAATGGCAAGGATGAGTTCACTACCAAGAAGGCTGGATGCTGCTAG___TTCTACCCATTGAATGCATTTTCTTTTTCTCCCCTCGTCAATATTTTTGTTAATCAGGTGCCATATGTTATTCTTGTAATGCTCAATTTGATTAGGTGCCATATGTTACTCTTGTAATGCTTAATTGATTTGATTCCAGTTGACTTATTAAAAAACATCCATTTTTCAAACTTCCATCAGTCTCCAAAGGATTGATGTATGGCCATGCATTCGCTATAGCATAGTGAAGCTGGGGTTATACTCAGAAGTGTAGAATCTTT

Fln Alignment:

Contig17134___MAYKTEEDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFAARSVNVDGKSIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRHVTFENVERWYKELKDHTDVNIVVMLVGNKSDLLHLRAVSIEEGKSFAERESLYFMETSALDSTNVENSFTQVLTQIYRIVSKRSLDTAEEALSTLPGKGQSISVNGKDEFTT-KKAGCC
A9NZD1_______________MAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSITVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIVIMLVGNKADLRHLRAVSIEDGKAFAERENTYFMETSALESTNVENAFTEVLSQIYRIVSKKALDVGEDP-AAVPSKGQTIHVGNKDDVTAMKKVGCC

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
317	10	90			0.90298
322		18	9	72	0.999994
323	27			72	1.0
795	26		73		1.0
977	43		56		1.0
1093		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain