SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene17087

Length: 1971 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene17087
CGTCGTGACCTTGGCTGTCACTCAACCCATTGAAAATAGTGTGCCAAGCAGAAACTGGACCATTGAATCCCTCTGTGCACACCTGTAAATCTCTGACATTCTTGTTTTTCTTTTGACGCTTTCATATGCTTTCTTTCCTCTTGGTCCCAGGCTTTCATGTGCGTTTTTGCTGTAGTAATTGACAGATAGATACCAATCGAGCTTTCAGTGATACTTTTGTATTTCCATTCTGACAAAGTTTGTACCTTCTTTATCACATTGTATTAAATACACACCCACCCTGTTCGGGGGAAAATATCATTGAACTTTTAAAGATCTGTGATCAAGGGGAGTGTAGCCTGTGTAGGTGTATTCATGGCTATTCACAAGTTCTTCCTCCTGCTGTTGTTAGCACTCTTAAACAGAGCTTGGGCAACATCTTTCATTATTGCAAACAATTGCAAATACAACGTGTGGCCTGGGTTTCTCTCTAATCCAGGCAAAACTCCCCTGTCTACCACCGGTTTCCAGCTTCTTCCAGGCCAGACACAAACCGTTGGCATACCTGCAGGTTGGGCCGGGCGTCTCTGGGGACGCACCGGTTGCACCTTTGATTCTACTGGTAAGGGCAACTGCTCCACTGCTGACTGTGGCGGTTCCCTTGAATGCAATGGTGCAGGGGCGATACCTCCCGCTTCCCTTGCAGAGTTCTCAATTGGGCAAGGCCAAGCCCAGGATTTCTATGACGTGAGCCTTGTTGATGGCTACAATCTTCCTCTGCTGATCACAGCTCAAGGGGGCACTGGTGCTTGCACCTCAACAGGTTGCATCACGGATATCAATCTCAGCTGCCCTAAGGTGCTACAGGTCGATGATGGTGTTGGAGGTACTGACGTTATGGCCTGCAAGAGCGCCTGTGCTGCCTTTGGAGATCCTGCATATTGCTGCAGTGGGGCATATGGGAATCCCAATACCTGCAAGCCAAGTGCTTACTCTCAGCTCTTCAAGACACAATGCCCCAGAGCCTACAGCTATGCCTATGATGATACCACTAGCACCTTCACGTGTACAGGTGCTGACTACACCATTACCTTCTGTCCTACCCTCGCTATGGCCAGCACTGAGAGAAAATCTAATACACCTGCGGTAGCTGATAGCCCAATAAGTGGCACTAGTAGCAATGACAATAATACAAATCCCCTGTTTCAGACCAGTGCAACGCAAGGGACTTCGGCCTCCTCCATGGATTCAGCAGCCTGCCGGCCACTCACAATTTCTTCTGGTCTTTCATTGATGATTGCTTTGATAGTGACTATAATTATCAACATCAGAATTTGCCATTGAAGCAATGCCTGCCAACCTAGCAGGTGGACCCACTCCCGGCACGTCTCTCTTTACAAATATCGATAGCATTATCCTGGGAGGGCCTTTTGGGTATTAGGGTAAGCATCGGTCCAGAGCTATGAACTCCATATCTACCGACAGGACTGGAATACAAGTAAAACACACAGGGTCCGGGACCCAATTCTCCTCATGTTTGATATGGCTGGGTCATTTGCTGCGTTTCAACTAATAGACCACCACATTGGAACAAAGGGTTTCCCAGTCATTCATTTGTGCCGCTATCTGTATTTTCTAATAGAGATGCAGTATCCACCTTCTGCTGCTACCTGTATTTTGTAATAGAGATGCGGTACTAGTAGGAGGGTGAGGAGTACTTGTAATTGATTGGATGGGAGAGGAATCTTCAACCCCCATTGCTCACAAGTTCAACCATGAGAAAATTATTATGATAAACTAATACTGGTTATATATATGTAGTACAATCTATGTAGTACAATGAATATACGTTGTACAACTTCATTGAGTTGGAGGTCTCTGTCAAATATTTTTCTAATGTCAAAGTCAAGCTACACATTGCTTTTTTTGGAGGTGTTTTCACCAAGTTCATAAATCCCGAAACTGGTTGTTGTGTATCAAATCATTTCAGTG

Ace file of the UniGene sp_v2.0_unigene17087 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative thaumatin-like protein [Trifolium pratense]	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	60%
Blast2go	thaumatin-like protein	-	-	70%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Inositol monophosphatase	IPR000760	-	-
Sma3	Blue (type 1) copper domain	IPR000923	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	-
Sma3	GNS1/SUR4 membrane protein	IPR002076	-	-
Sma3	Proteinase inhibitor I2, Kunitz metazoa	IPR002223	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	3(2),5 -bisphosphate nucleotidase HAL2	IPR006239	-	-
Sma3		IPR006670	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	Cyclin-like	IPR013763	-	-
Sma3	Cyclin D	IPR015451	-	-
Sma3	Thaumatin, conserved site	IPR017949	-	-
Sma3		IPR017973	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYU8

Fln msg: your sequence is longer than subject: 323 - 243

Fln protein: MAIHKFFLLLLLALLNRAWATSFIIANNCKYNVWPGFLSNPGKTPLSTTGFQLLPGQTQTVGIPAGWAGRLWGRTGCTFDSTGKGNCSTADCGGSLECNGAGAIPPASLAEFSIGQGQAQDFYDVSLVDGYNLPLLITAQGGTGACTSTGCITDINLSCPKVLQVDDGVGGTDVMACKSACAAFGDPAYCCSGAYGNPNTCKPSAYSQLFKTQCPRAYSYAYDDTTSTFTCTGADYTITFCPTLAMASTERKSNTPAVADSPISGTSSNDNNTNPLFQTSATQGTSASSMDSAACRPLTISSGLSLMIALIVTIIINIRICH*

Protein Length: 324

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACCCATTGAAAATAGTGTGCCAAGCAGAAACTGGACCATTGAATCCCTCTGTGCACACCTGTAAATCTCTGACATTCTTGTTTTTCTTTTGACGCTTTCATATGCTTTCTTTCCTCTTGGTCCCAGGCTTTCATGTGCGTTTTTGCTGTAGTAATTGACAGATAGATACCAATCGAGCTTTCAGTGATACTTTTGTATTTCCATTCTGACAAAGTTTGTACCTTCTTTATCACATTGTATTAAATACACACCCACCCTGTTCGGGGGAAAATATCATTGAACTTTTAAAGATCTGTGATCAAGGGGAGTGTAGCCTGTGTAGGTGTATTC_-_ATGGCTATTCACAAGTTCTTCCTCCTGCTGTTGTTAGCACTCTTAAACAGAGCTTGGGCAACATCTTTCATTATTGCAAACAATTGCAAATACAACGTGTGGCCTGGGTTTCTCTCTAATCCAGGCAAAACTCCCCTGTCTACCACCGGTTTCCAGCTTCTTCCAGGCCAGACACAAACCGTTGGCATACCTGCAGGTTGGGCCGGGCGTCTCTGGGGACGCACCGGTTGCACCTTTGATTCTACTGGTAAGGGCAACTGCTCCACTGCTGACTGTGGCGGTTCCCTTGAATGCAATGGTGCAGGGGCGATACCTCCCGCTTCCCTTGCAGAGTTCTCAATTGGGCAAGGCCAAGCCCAGGATTTCTATGACGTGAGCCTTGTTGATGGCTACAATCTTCCTCTGCTGATCACAGCTCAAGGGGGCACTGGTGCTTGCACCTCAACAGGTTGCATCACGGATATCAATCTCAGCTGCCCTAAGGTGCTACAGGTCGATGATGGTGTTGGAGGTACTGACGTTATGGCCTGCAAGAGCGCCTGTGCTGCCTTTGGAGATCCTGCATATTGCTGCAGTGGGGCATATGGGAATCCCAATACCTGCAAGCCAAGTGCTTACTCTCAGCTCTTCAAGACACAATGCCCCAGAGCCTACAGCTATGCCTATGATGATACCACTAGCACCTTCACGTGTACAGGTGCTGACTACACCATTACCTTCTGTCCTACCCTCGCTATGGCCAGCACTGAGAGAAAATCTAATACACCTGCGGTAGCTGATAGCCCAATAAGTGGCACTAGTAGCAATGACAATAATACAAATCCCCTGTTTCAGACCAGTGCAACGCAAGGGACTTCGGCCTCCTCCATGGATTCAGCAGCCTGCCGGCCACTCACAATTTCTTCTGGTCTTTCATTGATGATTGCTTTGATAGTGACTATAATTATCAACATCAGAATTTGCCATTGA___AGCAATGCCTGCCAACCTAGCAGGTGGACCCACTCCCGGCACGTCTCTCTTTACAAATATCGATAGCATTATCCTGGGAGGGCCTTTTGGGTATTAGGGTAAGCATCGGTCCAGAGCTATGAACTCCATATCTACCGACAGGACTGGAATACAAGTAAAACACACAGGGTCCGGGACCCAATTCTCCTCATGTTTGATATGGCTGGGTCATTTGCTGCGTTTCAACTAATAGACCACCACATTGGAACAAAGGGTTTCCCAGTCATTCATTTGTGCCGCTATCTGTATTTTCTAATAGAGATGCAGTATCCACCTTCTGCTGCTACCTGTATTTTGTAATAGAGATGCGGTACTAGTAGGAGGGTGAGGAGTACTTGTAATTGATTGGATGGGAGAGGAATCTTCAACCCCCATTGCTCACAAGTTCAACCATGAGAAAATTATTATGATAAACTAATACTGGTTATATATATGTAGTACAATCTATGTAGTACAATGAATATACGTTGTACAACTTCATTGAGTTGGAGGTCTCTGTCAAATATTTTTCTAATGTCAAAGTCAAGCTACACATTGCTTTTTTTGGAGGTGTTTTCACCAAGTTCATAAATCCCGAAACTGGTTGTTGTGTATCAAATCATTTCAGTG

Fln Alignment:

Contig17087___WATSFIIANNCKYNVWPGFLSNPGKTPLSTTGFQLLPGQTQTVGIPAGWAGRLWGRTGCTFDSTGKGNCSTADCGGSLECNGAGAIPPASLAEFSIGQGQAQDFYDVSLVDGYNLPLLITAQGGTGACTSTGCITDINLSCPKVLQVDDGVGGTDVMACKSACAAFGDPAYCCSGAYGNPNTCKPSAYSQLFKTQCPRAYSYAYDDTTSTFTCTGADYTITFCP
A9NYU8_______________FATTFTLFNKCKHSVWPGIQPSAGRPVLANGGFRLMPLQAMSIVPPAGWSGRIWGRHGCSFDSDGKGLCATGDCGGQLHCNGAGGAPPATLAEITLG---TQDFYDVSLVDGYNLPIAIAPRRGSGKCTYAGCISDLNLSCPPSLQVKNEQG--CVMACKSACFAFSTPQYCCTGSYGNPQTCRPTSFSRLFKNACPRAYSYAYDDPNSLVTCSGADYLITFCP

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
611	20		80		1.0
956	36		63		1.0
1233		84	15		0.999986
1237	15	84			0.999986
1251	10			90	0.90298
1498		85		14	0.993533
1639			88	11	0.923564
1641	11	88			0.923564
1642			11	88	0.923564
1643	88			11	0.923564
1644		88	11		0.923564
1647	11			77	0.968132
1648		88	11		0.923564
1649		88		11	0.923564
1650		88	11		0.923564
1651	22	77			0.999999
1652			11	22	0.999999
1653	11	11		77	0.968132
1655		11	88		0.923564
1656	88		11		0.923564
1659	87	12			0.992554
1661	62	12			1.0
1662	12	12	75		0.975346
1664		12	12	75	0.975346
1665		71	28		1.0
1667		16		83	0.994512
1668	16			83	0.994512
1669	83	16			0.994512
1670	83		16		0.994512
1672	83	16			0.994512
1687		33		66	0.997452
1691		66		33	0.997452
1850	85			14	0.993533
1853	85		14		0.993533
1854	85			14	0.993533
1858		14		85	0.993533
1860			14	85	0.993533
1861		14	85		0.993533
1862	85	14			0.993533
1871	83	16			0.994512
1872	83		16		0.994512
1879	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain