SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene17074

Length: 1143 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene17074

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Eukaryotic translation initiation factor 6-2 n=8 Tax=Magnoliophyta RepID=IF62_ARATH	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	eukaryotic translation initiation factor 6	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	cellular response to abscisic acid stimulus	GO:0071215	Biological Process	92%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	92%
Blast2go	cytosol	GO:0005829	Cellular Component	92%
Blast2go	nucleolus	GO:0005730	Cellular Component	92%

Source	InterPros	Term	Type	e value	Identity
Sma3	Translation initiation factor IF6	IPR002769	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NK83

Fln msg:

Fln protein: MATRTQFENSSEVGVFSKLTNGYCLVAIGGSENFYSTFEAELADVIPVVKTSIGGTRIVGRLCAGNKKGLLLPNTTTDQELQHLRNSLPDEVVAQRVEERLSALGNCVVCNDHVALIHTDLDRETEELIADVLGVEVFRQTIAGNILVGSYSVFSNRGGLVHPHTSIEDLDELSTLLQVPLEAGTVNRGSEVIGAGMIVNDWTAFCGLDTTATELSVIESVFKLRESQPSAIVDEMRKSLIDTFV*

Protein Length: 247

Fln nts: ATGACGCGGGTTTAACTATAGCATCGGTTGATTCCTGCTTGGAGAAGCGGAAGCCTTGCCAATACACATTTTTTTTGAAAACAAGCGGATCCCAATCTCGCCGTGAAGCTCGTCAGTTAGGAGTAAATCATTTCTTTGCTGTGCATC_-_ATGGCTACCAGAACTCAGTTTGAAAATTCCAGTGAGGTTGGCGTCTTTTCAAAACTTACTAATGGATATTGCCTGGTGGCCATTGGAGGATCAGAAAACTTTTACAGTACATTTGAGGCAGAACTGGCAGATGTTATTCCTGTTGTGAAGACATCTATAGGAGGCACCAGGATTGTTGGGCGTCTTTGTGCTGGGAACAAAAAAGGTCTTTTGCTCCCAAACACAACTACCGACCAAGAACTTCAGCACTTGAGGAATAGTTTGCCGGATGAAGTTGTGGCGCAACGAGTTGAAGAACGACTGTCTGCGCTTGGCAATTGTGTGGTGTGCAATGATCATGTTGCTCTCATTCATACCGACCTGGACAGGGAGACAGAAGAATTAATAGCAGACGTTCTGGGAGTTGAGGTTTTCAGGCAAACTATTGCTGGAAATATTCTTGTTGGGAGTTATAGTGTTTTTTCTAATAGAGGTGGCCTGGTCCATCCACACACTTCAATAGAAGATCTGGATGAATTATCAACTCTTCTTCAAGTGCCTCTTGAGGCAGGCACTGTCAATCGTGGAAGTGAAGTAATAGGTGCTGGAATGATTGTAAATGATTGGACAGCTTTTTGTGGTCTGGACACAACTGCAACTGAATTGTCTGTTATCGAAAGTGTTTTCAAGTTGAGAGAATCACAGCCTAGTGCTATTGTCGATGAGATGAGAAAGTCATTGATAGATACTTTTGTCTGA___GTATCAATGCCATTTCTCATGTCTCATCGCTTTTTAGTTGAGCTTACTATCTGTAACTAAACTCCATGGCTAACATGTGGGTAGCAGTTATGTCTGTTAAACCTTGAGAATATTGAGTTATTATGTTGAACGAGTTCTAGTAACTACACTCCATGGCTAACATGTGTGTAGCAGTTATGTCTTTTAAATCTGTATTTATCTAAGAGTGACTTACGTTTGTTGTAAACGCTTGGGAATATTGTAAATGTATGTGATTGC

Fln Alignment:

Contig17074___MATRTQFENSSEVGVFSKLTNGYCLVAIGGSENFYSTFEAELADVIPVVKTSIGGTRIVGRLCAGNKKGLLLPNTTTDQELQHLRNSLPDEVVAQRVEERLSALGNCVVCNDHVALIHTDLDRETEELIADVLGVEVFRQTIAGNILVGSYSVFSNRGGLVHPHTSIEDLDELSTLLQVPLEAGTVNRGSEVIGAGMIVNDWTAFCGLDTTATELSVIESVFKLRESQPSAIVDEMRKSLIDTFV
A9NK83_______________MATRTQFENSSEVGVFSKLTNAYCLVAIGGSENFYSTFEAELADVIPVVKTSIAGTRIIGRLCAGNKNGLLLPNTTTDEELQHLRNSLPDEVVVQRVEERLSALGNCVVCNDHVALIHTDLDRETEELIANVLGVEVFRQTIAGNILVGSYCMFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGMIVNDWTAFCGLDTTATELSVIESVFKLRESQPSAIVDEMKKSLIDTFV

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
505	10		90		0.90298
600		14		85	0.993533
749	57		42		1.0
750		42		57	1.0
753		42	57		1.0
756	71			28	1.0
757		33	66		1.0
758	33	66			1.0
777	75		25		1.0
778	75			25	1.0
784	75	25			1.0
788	75		25		1.0
789	75	25			1.0
792	25		75		1.0
796	12		87		0.992554
1025	35			5	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain