SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene17026

Length: 2163 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene17026
CGTCGTGACCTTGGCTGTCACTCATTTTTTTCTAGAACAGCGCAAAGAATAGCCGTACGATTTGTCTGCATCAAAACTCTGGCCCCGAGGGTTTAATGGACGTCATAAACAGAGTGTGGAAGCAGCTCCATACAGAGAATTGGGACATGGTTACCTGAATGTGTGAGGCATCGTGTGAACCCAATTTCAAGATCCACCGACTCGGCTCTCAGCTCTTCAACAGCCCCATTTTTGAGCCAAAATGGCCACTTCTTGAAGTACAACGGTTGGGATTGATGTGAAGGGAAGTTCCTCCAGTTTGAACTCTATCACTTCCGTGGCCATGTTTTGAGCGCGGGGTGTATAGAAGTTCTTGGATTGAAAATCATAGACTGTGTTGGTAGATTCAGGACCCATAGAATGGGACCCGACATTATTTAGTTTGCAATCTTTGCTTCCAATCTCTCGCATTGCAATTTTTGATCATTGTTTATTAGCTGCAGTGGACTCTACGAGACTCCGAGTTGTTCCGTGGCAGTTGAGCGGTGAAATTGAGGTTTTGGTTTCTGCTTGCTTGAGGTGTAAGATTTTGCCCTGTAGTGAAAGCAACAAGAGCATATAAATATCCTGACACGAGCCGTCAGCATTTGGCGCTCTGTAGAATAATGTGCTGGACAATCATTTTTTCGTAGGAGTACTTTCGTCGATAATAGAAATGTTTGAACGCTTTGTCTGATTTGTCAGCTGTAATGTTTTGAATCTGGAGATTTTCTTGGACGGAAACTATTAGCTTAAGGGGAGTTTTTGAGGATCTTCGAGCGTTGAGACTTTTAAAGTTGGAGGACGATGGAGAGACCGAAGCTCGGGGGCTTGCTATTCATTACGACTATTTTGGCGGCGTTTCTGGCGCCTGTAAACGGAGATACAAATCCACAAGACGTGTCTGTTCTGACAAACCTCTACACTAGTCTACAGTCCCCATCACAGCTTACAGGATGGAGTTCTAGTGGAACTGATCCATGTGGTCAGTCATGGAAAGGAGTCTACTGCTCAGCATCTGCTGTAACAGAAATAAAACTTTCTGGCCTAGGACTGACAGGAACGATGGGCTATGAGCTATCAAACCTTTCTTCCTTGACGACTTTAGATCTGAGCAACAACAATATTCAAAACTCCATCCCTTACCAACTTCCTCCCAACATTACATACCTTAACCTTGCAGGCAATGCCCTCAGTGGTCAACTACCTTACTCAATTTCAGAAATTACTTCACTCAATTACTTGAATATCAGTCATAATTCAATCTCAGGCCAGATCCCAGATTTCTTCAGCAAACTGTTGAACGTCTTCACTCTGGATCTTTCCTTCAACAGTTTTGTACAAGATATTCCTTCAAGTTTCAGCTCACTCTCAAATCTTTCTGTCCTGTATGTGCAGAATAATCAGCTGACGGGGCCTATTGATGTTCTTGGCAACCTTCCTCTGACAGATCTGAATATTGAAAATAATCATTTCACTGGCTGGCTACCAAAAGATTTTCAGTCTAATCCAAATTTTAAAACTGGTGGTAATTCTTTCAGCACAGGCCCTGCTCCTCCACCCCCACCTTATCATGCACCTCCACCCTCTGACATTCCTGTAAGTGGTCATAATGCAACTAGGAGTCCACAACATAAGTCCCCACCTTCACAGAATTCAACTGCTCATTCCAAGCACCAGAGCACTGATAAAACTGGTCTTACTAGTGGGGCGATAGCAGGAATAGTAATTGCAGGCGTATTAGCTGCTGTTGCGACTGTCTTAGGAATCATTTTCTTTGCATGGAGGTCTCCCAAAAAAGGGCAGGACGAAGAGAGGGTTAATAATGGAAATGCATCTTTGAGCCCTCTTGCTGCTTTCATGGTTAAAGCACCAAAGGAGAGCTCAGAGCCAAAAATAAGGGCATCACCTCCTGAGATCATGCTTAAGCCTCCTCCTTCGGAACGCCACAAGATTAATGGTGACAGGGGGCTTGAGAGGAAGTCTACCAGCAAGAGAGCTAAAAGTCCAATTACTGCAATAACATATTCTATAGCAGATTTGCAGATGGCAACAAACAGCTTCAGTCAAGAAAATCTTATTGGTGAGGGTGCTCTTGGACGAGTTTACAAAGCTGACTTCCCTAATGGAAAGGTTTTTGCAGTG

Ace file of the UniGene sp_v2.0_unigene17026

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	strubbelig receptor, putative (EC:2.7.10.1)	-	-	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	28%
Blast2go	leucine-rich repeat transmembrane protein kinase	-	-	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	59%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRM4

Fln msg: Distance to subject end: 466 aas, your sequence is shorter than subject: 446 - 907

Fln protein: MERPKLGGLLFITTILAAFLAPVNGDTNPQDVSVLTNLYTSLQSPSQLTGWSSSGTDPCGQSWKGVYCSASAVTEIKLSGLGLTGTMGYELSNLSSLTTLDLSNNNIQNSIPYQLPPNITYLNLAGNALSGQLPYSISEITSLNYLNISHNSISGQIPDFFSKLLNVFTLDLSFNSFVQDIPSSFSSLSNLSVLYVQNNQLTGPIDVLGNLPLTDLNIENNHFTGWLPKDFQSNPNFKTGGNSFSTGPAPPPPPYHAPPPSDIPVSGHNATRSPQHKSPPSQNSTAHSKHQSTDKTGLTSGAIAGIVIAGVLAAVATVLGIIFFAWRSPKKGQDEERVNNGNASLSPLAAFMVKAPKESSEPKIRASPPEIMLKPPPSERHKINGDRGLERKSTSKRAKSPITAITYSIADLQMATNSFSQENLIGEGALGRVYKADFPNGKVFAV

Protein Length: 447

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTTTCTAGAACAGCGCAAAGAATAGCCGTACGATTTGTCTGCATCAAAACTCTGGCCCCGAGGGTTTAATGGACGTCATAAACAGAGTGTGGAAGCAGCTCCATACAGAGAATTGGGACATGGTTACCTGAATGTGTGAGGCATCGTGTGAACCCAATTTCAAGATCCACCGACTCGGCTCTCAGCTCTTCAACAGCCCCATTTTTGAGCCAAAATGGCCACTTCTTGAAGTACAACGGTTGGGATTGATGTGAAGGGAAGTTCCTCCAGTTTGAACTCTATCACTTCCGTGGCCATGTTTTGAGCGCGGGGTGTATAGAAGTTCTTGGATTGAAAATCATAGACTGTGTTGGTAGATTCAGGACCCATAGAATGGGACCCGACATTATTTAGTTTGCAATCTTTGCTTCCAATCTCTCGCATTGCAATTTTTGATCATTGTTTATTAGCTGCAGTGGACTCTACGAGACTCCGAGTTGTTCCGTGGCAGTTGAGCGGTGAAATTGAGGTTTTGGTTTCTGCTTGCTTGAGGTGTAAGATTTTGCCCTGTAGTGAAAGCAACAAGAGCATATAAATATCCTGACACGAGCCGTCAGCATTTGGCGCTCTGTaGcATtgTGTGCTGGaCAcTCATTTTTTCGTAGGAGTACTTTCGTCGATAATAGAAATGTTTGAACGCTTTGTCTGATTTGTCAGCTGTAATGTTTTGAATCTGGAGATTTTCTTGGACGGAAACTATTAGCTTAAGGGGAGTTTTTGAGGATCTTCGAGCGTTGAGACTTTTAAAGTTGGAGGACG_-_ATGGAGAGACCGAAGCTCGGGGGCTTGCTATTCATTACGACTATTTTGGCGGCGTTTCTGGCGCCTGTAAACGGAGATACAAATCCACAAGACGTGTCTGTTCTGACAAACCTCTACACTAGTCTACAGTCCCCATCACAGCTTACAGGATGGAGTTCTAGTGGAACTGATCCATGTGGTCAGTCATGGAAAGGAGTCTACTGCTCAGCATCTGCTGTAACAGAAATAAAACTTTCTGGCCTAGGACTGACAGGAACGATGGGCTATGAGCTATCAAACCTTTCTTCCTTGACGACTTTAGATCTGAGCAACAACAATATTCAAAACTCCATCCCTTACCAACTTCCTCCCAACATTACATACCTTAACCTTGCAGGCAATGCCCTCAGTGGTCAACTACCTTACTCAATTTCAGAAATTACTTCACTCAATTACTTGAATATCAGTCATAATTCAATCTCAGGCCAGATCCCAGATTTCTTCAGCAAACTGTTGAACGTCTTCACTCTGGATCTTTCCTTCAACAGTTTTGTACAAGATATTCCTTCAAGTTTCAGCTCACTCTCAAATCTTTCTGTCCTGTATGTGCAGAATAATCAGCTGACGGGGCCTATTGATGTTCTTGGCAACCTTCCTCTGACAGATCTGAATATTGAAAATAATCATTTCACTGGCTGGCTACCAAAAGATTTTCAGTCTAATCCAAATTTTAAAACTGGTGGTAATTCTTTCAGCACAGGCCCTGCTCCTCCACCCCCACCTTATCATGCACCTCCACCCTCTGACATTCCTGTAAGTGGTCATAATGCAACTAGGAGTCCACAACATAAGTCCCCACCTTCACAGAATTCAACTGCTCATTCCAAGCACCAGAGCACTGATAAAACTGGTCTTACTAGTGGGGCGATAGCAGGAATAGTAATTGCAGGCGTATTAGCTGCTGTTGCGACTGTCTTAGGAATCATTTTCTTTGCATGGAGGTCTCCCAAAAAAGGGCAGGACGAAGAGAGGGTTAATAATGGAAATGCATCTTTGAGCCCTCTTGCTGCTTTCATGGTTAAAGCACCAAAGGAGAGCTCAGAGCCAAAAATAAGGGCATCACCTCCTGAGATCATGCTTAAGCCTCCTCCTTCGGAACGCCACAAGATTAATGGTGACAGGGGGCTTGAGAGGAAGTCTACCAGCAAGAGAGCTAAAAGTCCAATTACTGCAATAACATATTCTATAGCAGATTTGCAGATGGCAACAAACAGCTTCAGTCAAGAAAATCTTATTGGTGAGGGTGCTCTTGGACGAGTTTACAAAGCTGACTTCCCTAATGGAAAGGTTTTTGCAGTG

Fln Alignment:

Contig17026___ILAAFLAPVNGDTNPQDVSVLTNLYTSLQSPSQLTGWSSSGTDPCGQSWKGVYCSASAVTE-IKLSGLGLTGTMGYEXXXXXXXXXXXXXXXXIQNSIPYQLP------PNITYLNLAGNALSGQLPYSISEITSLNYLNISHNSISGQIPDFFSKLLNVFTLDLSFNSFVQDIPXXXXXXXXXXXXYVQNNQLTGPI-DVLGNLPLTDL-NIENNHFTGWLPKDFQSNPNFK
B8LRM4_______________VLSLVFAAVDNAVSQSDQRTMEILRDQLQGSK----WNATDQDFC--KWYGVYCNSNRMVERLELSHLGLTGNFS-----VLIALKALTWLDLSLNSFSGRIPSFLGQMQVLQCLDLSANHFSGTIPSEIGNMRSLFYLNLSSNALTGRIPPELSSIKGLKILNLNTNGLNGGIPEEFHRLESLQELQLSVNHLTGPIPQWISNLTSLEIFTAYENSFNGAIPQNLGLNSNLE

SNPs (tot: 57)

Position	A %	C %	G %	T %	Probability
151		33		66	0.997452
267		33		66	0.997452
274		25		75	0.996473
276	80			20	0.995493
277		20		80	0.995493
284	75			25	0.996473
285			75	25	0.996473
288	75	25			0.996473
289	75			25	0.996473
292		25		75	0.996473
293	25	75			0.996473
297	25	75			0.996473
599		25		75	0.996473
634			75	25	0.996473
660		33		66	0.997452
877	10		90		0.90298
879	10		90		0.90298
880			90	10	0.90298
881		90		10	0.90298
962	10	90			0.90298
963	90	10			0.90298
1016	16		83		0.999991
1017			81	18	0.999994
1020	88	11			0.923564
1021			87	12	0.992554
1022		12	87		0.992554
1135	76	23			1.0
1137		76		23	1.0
1138	76	23			1.0
1139	76		23		1.0
1140		84		15	1.0
1141	73	3	23		1.0
1142	84		3	11	1.0
1144	73	11	3	3	1.0
1145	73		15	11	1.0
1147	79	5	11	2	1.0
1148	2	2	17	73	1.0
1149		14		85	1.0
1150		91		8	1.0
1151	76		14	5	1.0
1152	70	2		20	1.0
1153	76	8	11	2	1.0
1154	91	2	5		0.995912
1155	2	91			0.995912
1158	15	84			1.0
1159	87	6		6	0.990219
1161		93	6		0.99903
1162		93	6		0.99903
1165			6	93	0.99903
1166	93			6	0.99903
1168	5	94			0.9982
1169	94	5			0.9982
1170	94			5	0.9982
1172	5			94	0.9982
1233		66		33	1.0
2068	88		11		0.923564
2069			11	88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain