SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene17004

Length: 2854 nt

Origin of reads: Inia v1 Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene17004
ATGGGGACTGAACCCACAGCCTGTATTGACTCATTAGTGACAACTATGCCTTCAAGATTAATTTTTGTGTTAATACAGGTTTTGGGGTTGTTTCTTGAACCCTTGAGAGGGGAGGTTTACGTTGTATTGATGAGAGATGAACCTGTGGTCTCTTACAAGGGTTCAATTCCAGGATATCCTGCTACTGGATCGTTCTCAGGCATCAAGGTTGATGTCACCAGCCAATATGTAGAGTTATACCGGAACTATTTGATCAAAAGCCACAATATGGTACTCCAGAATACTCTCCAAAAGGGCACATACAGTAAATTGTATAGTTATCATCACCTTGTCAATGGTTTTGCTGTGGAGACTAATTCGGCTGAGGCAGCAGAACGCTTGGCAGTGGCAGAAGGGGTAAGGTGCATTCAGAAAGACAGAAAGATTGAAAAACTGACCACCCACACCCCTGATTTCCTAGGTATTTCCTCTCATGTGTGGCCTCTACTCGGTGGTGCTCGGAACTCAGGGGAAGGAGTGGTGATTGGGATGATTGACAGTGGTATCGACCCCATTCATCCGAGCTTCTCCAACTCTCAGTTTAGTGAAGGAGCACTTTCCAGGGGACGCCATAATCCCAAAAACAGACACAGGAATTACACTGGTAAATGCGAGATGGCCAAAGAATTCCCAAAAGGTTCTTGCAATGGGAAGATCATAGGTGCACAGCATTTTGATTTATCAATAAAAGCAGCAGGCCAATTCAATGTTACAGCAGATTCTGCTTCTCCTTTCGATACCGGTGGCCATGGAAGCCATACAGCCTCAACTGCCGCTGGAAATCATGGAGTTCCCGTGACTGTAAATGGTTTCAACTACGGATTTGCAAGTGGCATGGCACCTGGTGCTCGGATTGCGGTCTATAAAGCGATTTATTCCATGGGAGGATACTTGGCAGATGTGGTAGCTGCAATTGATCAGGCAGTAGAGGACGGAGTAGACATACTGAGTCTGTCAATAGGTCCATCAAGTATTAGCTCGGATGTTTCAACATTTTTGGATGTCCTGGACGTTGAGCTCCTTTACGCGGTAAAAGCAGGTGTTTTCGTTGTTCAAGCAGGTGGTAATAACGGGCCCGTTGCCAGCAGTGTGCTGTCCTTCAGTCCATGGATCTCCACAGTCGCTGCTTCGCTCACAGACAGAACATATAACAACTTCGTTGAACTAGGCAATGGGCAAAAATATGCTGGGCTTGGTCTTTCTCCTCCCACTAAAGGAGAATCAGAATATTACAGAATGGTGACTGCCATGGACGCCTTCGACAAGAACAGTTCTTACAGCGGAGTGAATACTTGCCAGTATCCGGAAGCCTTCATCAAGAAAGTAGTTGAGGGGAACATTTTAATCTGCAGCTATACTATTGACTTCGACCTCGAAGTGGCCAGCATAACGACAGTTTCAGACACTGCTCAGAAATTGGGTGCCGCAGGATTTGTGATGACAGTAGATCCCACTTTTGGATCGCTGTCTTTTAGGAGCGGCCCTGCTATTTTTACAAGCCCTGGGACAATTGTCCTGGACGAGCAGTCTTCTTTGAACCTGTTGACGTATTACAGTAACAATACCAGGCGCGATGCAAGTGGCTCCGTCGTAGAATTTGGAGCAACAGCTAGAATTGGGGATGGGCGAGTTGCGGCATACAGTGGCGAGGGCCCAACGGTTGCTTCCTATTCTTCTCGAGGACCTGATCTCAACAATAAAGCTGGGCAATTTGCTGATGTCCTCAAACCAAATATAATGGCTCCCGGCCACCTTATATGGGCTGCTTGGAGCCCAACCAGCGTTGATGACAAAGTCTTCCGAGAGCAGAACTTCGCAATGGTCTCAGGCACCAGTATGGCGACACCCCATGTGGCAGGAGTCGCAGCGATGATCAAACAGAATCATCCGGATTGGAGTTCAGCTGCTATTTCTTCCGCTATGATGACGACTGCATCAACGGCAGATCGCTTTGGAAAACCGATTCTTGCACAGAGTCCGTGGGGAAATATATCTGCCCAGTTGGGGAATCTCGCCGGGGCTGCCACCCAGTTCGATTATGGTGCAGGTCTCATCAATCCTGCAAAGGCTATGGATCCGGGCCTCGTTTTTGATGCGGATTTTGATGATTATATGAGTTTCTTATGCTCTCTCCCTGGAGTGGACGAGGCCTCTGTGCGTGAGGCAACAGGAATGGGATGCTCATCAAGAATGACTTGGGCCTCAGATCTGAATACTGCTTCAATCACAGTCGGGAATCTTATGGGCTCTAGGAAAGTGCATCGCGTGGTGAAGAATGTAGCTGCAGATTATTCAAAAGAGGTGTACGAGGCCAACATTACAGAGCCAGAGGGTGTGAAGGTCAAAGTAAAGCCTCGTAAATTCACCATACACAAGGGCTCATCTAAATCGTTATTGGTGACCTTAAAAGTGAAGGTGGCTACAGGCACGTTTGTATTTGGAGAGATTGTGTTGACTGGTAACAGAGACCACCTTGTTAGTATTCCTCTCGCTGTGTGTCCCACCTCTGTCATTGGGTGATAACAAGTGAACAACCAATCACTTAGCATGTATTCTGCCAATCCCAGATATTTGTTGGATGAGTGTGTTCATTAAGAAACATACTAAATTGAAAAGCTCTATCAATTTATCTTAACTGGACGCTGACCAGGATGGGCAGCAGTCAAAAATGAAAAAAATTGTATTGCAGCTCACTCTCATAATTATGTGTTCTGGTTCTGGCAAATATTTTTCTCTAGCTTCTAAAGAAATAGAGAGAAGAGGTTTTAACTCCAGAACCATGGATAAAAATCATTGTTCAGTTCCATTGAAAGAA

Ace file of the UniGene sp_v2.0_unigene17004

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Peptidase, putative n=1 Tax=Ricinus communis RepID=B9SEE1_RICCO	-	-	51%
FL-Next	tr=Peptidase, putative; Ricinus communis (Castor bean).	-	-	54%
Blast2go	subtilisin-like protease-like	-	-	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	64%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	Proteinase inhibitor I9	IPR010259	-	-
Sma3	Peptidase S8A, DUF1034 C-terminal	IPR010435	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9SEE1

Fln msg: your sequence is longer than subject: 853 - 804

Fln protein: MGTEPTACIDSLVTTMPSRLIFVLIQVLGLFLEPLRGEVYVVLMRDEPVVSYKGSIPGYPATGSFSGIKVDVTSQYVELYRNYLIKSHNMVLQNTLQKGTYSKLYSYHHLVNGFAVETNSAEAAERLAVAEGVRCIQKDRKIEKLTTHTPDFLGISSHVWPLLGGARNSGEGVVIGMIDSGIDPIHPSFSNSQFSEGALSRGRHNPKNRHRNYTGKCEMAKEFPKGSCNGKIIGAQHFDLSIKAAGQFNVTADSASPFDTGGHGSHTASTAAGNHGVPVTVNGFNYGFASGMAPGARIAVYKAIYSMGGYLADVVAAIDQAVEDGVDILSLSIGPSSISSDVSTFLDVLDVELLYAVKAGVFVVQAGGNNGPVASSVLSFSPWISTVAASLTDRTYNNFVELGNGQKYAGLGLSPPTKGESEYYRMVTAMDAFDKNSSYSGVNTCQYPEAFIKKVVEGNILICSYTIDFDLEVASITTVSDTAQKLGAAGFVMTVDPTFGSLSFRSGPAIFTSPGTIVLDEQSSLNLLTYYSNNTRRDASGSVVEFGATARIGDGRVAAYSGEGPTVASYSSRGPDLNNKAGQFADVLKPNIMAPGHLIWAAWSPTSVDDKVFREQNFAMVSGTSMATPHVAGVAAMIKQNHPDWSSAAISSAMMTTASTADRFGKPILAQSPWGNISAQLGNLAGAATQFDYGAGLINPAKAMDPGLVFDADFDDYMSFLCSLPGVDEASVREATGMGCSSRMTWASDLNTASITVGNLMGSRKVHRVVKNVAADYSKEVYEANITEPEGVKVKVKPRKFTIHKGSSKSLLVTLKVKVATGTFVFGEIVLTGNRDHLVSIPLAVCPTSVIG*

Protein Length: 854

Fln nts: _-_ATGGGGACTGAACCCACAGCCTGTATTGACTCATTAGTGACAACTATGCCTTCAAGATTAATTTTTGTGTTAATACAGGTTTTGGGGTTGTTTCTTGAACCCTTGAGAGGGGAGGTTTACGTTGTATTGATGAGAGATGAACCTGTGGTCTCTTACAAGGGTTCAATTCCAGGATATCCTGCTACTGGATCGTTCTCAGGCATCAAGGTTGATGTCACCAGCCAATATGTAGAGTTATACCGGAACTATTTGATCAAAAGCCACAATATGGTACTCCAGAATACTCTCCAAAAGGGCACATACAGTAAATTGTATAGTTATCATCACCTTGTCAATGGTTTTGCTGTGGAGACTAATTCGGCTGAGGCAGCAGAACGCTTGGCAGTGGCAGAAGGGGTAAGGTGCATTCAGAAAGACAGAAAGATTGAAAAACTGACCACCCACACCCCTGATTTCCTAGGTATTTCCTCTCATGTGTGGCCTCTACTCGGTGGTGCTCGGAACTCAGGGGAAGGAGTGGTGATTGGGATGATTGACAGTGGTATCGACCCCATTCATCCGAGCTTCTCCAACTCTCAGTTTAGTGAAGGAGCACTTTCCAGGGGACGCCATAATCCCAAAAACAGACACAGGAATTACACTGGTAAATGCGAGATGGCCAAAGAATTCCCAAAAGGTTCTTGCAATGGGAAGATCATAGGTGCACAGCATTTTGATTTATCAATAAAAGCAGCAGGCCAATTCAATGTTACAGCAGATTCTGCTTCTCCTTTCGATACCGGTGGCCATGGAAGCCATACAGCCTCAACTGCCGCTGGAAATCATGGAGTTCCCGTGACTGTAAATGGTTTCAACTACGGATTTGCAAGTGGCATGGCACCTGGTGCTCGGATTGCGGTCTATAAAGCGATTTATTCCATGGGAGGATACTTGGCAGATGTGGTAGCTGCAATTGATCAGGCAGTAGAGGACGGAGTAGACATACTGAGTCTGTCAATAGGTCCATCAAGTATTAGCTCGGATGTTTCAACATTTTTGGATGTCCTGGACGTTGAGCTCCTTTACGCGGTAAAAGCAGGTGTTTTCGTTGTTCAAGCAGGTGGTAATAACGGGCCCGTTGCCAGCAGTGTGCTGTCCTTCAGTCCATGGATCTCCACAGTCGCTGCTTCGCTCACAGACAGAACATATAACAACTTCGTTGAACTAGGCAATGGGCAAAAATATGCTGGGCTTGGTCTTTCTCCTCCCACTAAAGGAGAATCAGAATATTACAGAATGGTGACTGCCATGGACGCCTTCGACAAGAACAGTTCTTACAGCGGAGTGAATACTTGCCAGTATCCGGAAGCCTTCATCAAGAAAGTAGTTGAGGGGAACATTTTAATCTGCAGCTATACTATTGACTTCGACCTCGAAGTGGCCAGCATAACGACAGTTTCAGACACTGCTCAGAAATTGGGTGCCGCAGGATTTGTGATGACAGTAGATCCCACTTTTGGATCGCTGTCTTTTAGGAGCGGCCCTGCTATTTTTACAAGCCCTGGGACAATTGTCCTGGACGAGCAGTCTTCTTTGAACCTGTTGACGTATTACAGTAACAATACCAGGCGCGATGCAAGTGGCTCCGTCGTAGAATTTGGAGCAACAGCTAGAATTGGGGATGGGCGAGTTGCGGCATACAGTGGCGAGGGCCCAACGGTTGCTTCCTATTCTTCTCGAGGACCTGATCTCAACAATAAAGCTGGGCAATTTGCTGATGTCCTCAAACCAAATATAATGGCTCCCGGCCACCTTATATGGGCTGCTTGGAGCCCAACCAGCGTTGATGACAAAGTCTTCCGAGAGCAGAACTTCGCAATGGTCTCAGGCACCAGTATGGCGACACCCCATGTGGCAGGAGTCGCAGCGATGATCAAACAGAATCATCCGGATTGGAGTTCAGCTGCTATTTCTTCCGCTATGATGACGACTGCATCAACGGCAGATCGCTTTGGAAAACCGATTCTTGCACAGAGTCCGTGGGGAAATATATCTGCCCAGTTGGGGAATCTCGCCGGGGCTGCCACCCAGTTCGATTATGGTGCAGGTCTCATCAATCCTGCAAAGGCTATGGATCCGGGCCTCGTTTTTGATGCGGATTTTGATGATTATATGAGTTTCTTATGCTCTCTCCCTGGAGTGGACGAGGCCTCTGTGCGTGAGGCAACAGGAATGGGATGCTCATCAAGAATGACTTGGGCCTCAGATCTGAATACTGCTTCAATCACAGTCGGGAATCTTATGGGCTCTAGGAAAGTGCATCGCGTGGTGAAGAATGTAGCTGCAGATTATTCAAAAGAGGTGTACGAGGCCAACATTACAGAGCCAGAGGGTGTGAAGGTCAAAGTAAAGCCTCGTAAATTCACCATACACAAGGGCTCATCTAAATCGTTATTGGTGACCTTAAAAGTGAAGGTGGCTACAGGCACGTTTGTATTTGGAGAGATTGTGTTGACTGGTAACAGAGACCACCTTGTTAGTATTCCTCTCGCTGTGTGTCCCACCTCTGTCATTGGGTGA___TAACAAGTGAACAACCAATCACTTAGCATGTATTCTGCCAATCCCAGATATTTGTTGGATGAGTGTGTTCATTAAGAAACATACTAAATTGAAAAGCTCTATCAATTTATCTTAACTGGACGCTGACCAGGATGGGCAGCAGTCAAAAATGAAAAAAATTGTATTGCAGCTCACTCTCATAATTATGTGTTCTGGTTCTGGCAAATATTTTTCTCTAGCTTCTAAAGAAATAGAGAGAAGAGGTTTTAACTCCAGAACCATGGATAAAAATCATTGTTCAGTTCCATTGAAAGAA

Fln Alignment:

Contig17004___MPSRLIFVLIQVLGLFLEPLRGE--VYVVLMRDEPVVSYKGSIPGYPATGSFSGIKVDVTSQYVELYRNYLIKSHNMVLQNTLQKGTYSKLYSYHHLVNGFAVETNSAEAAERLAVAEGVRCIQKDRKIEKLTTHTPDFLGISSHVWPLLGGARNSGEGVVIGMIDSGIDPIHPSFSNSQFSEGALSRGRHNPKNRHRNYTGKCEMAKEFPKGSCNGKIIGAQHFDLSIKAAGQFNVTADSASPFDTGGHGSHTASTAAGNHGVPVTVNGFNYGFASGMAPGARIAVYKAIYSMGGYLADVVAAIDQAVEDGVXXXXXXXXXXXXXXXXXTFLDVLDVELLYAVKAGVFVVQAGGNNGPVASSVLSFSPWISTVAASLTDRTYNNFVELGNGQKYAGLGLSPPTKGESEYYRMVTAMDAFDKNSSYSGVNTCQYPEAFIKKVVEGNILICSYTIDFDLEVASITTVSDTAQKLGAAGFVMTVDPTFGSLSFRSGPAIFTSPGTIVLDEQSSLNLLTYYSNNTRRDASGSVVEFGATARIGDGRVAAYSGEGPTVASYSSRGPDLNNKAGQFADVLKPNIMAPGHLIWAAWSPTSVDDKVFREQNFAMVSGTSMATPHVAGVAAMIKQNHPDWXXXXXXXXXXXXXXXXDRFGKPILAQSPWGNISAQLGNLAGAATQFDYGAGLINPAKAMDPGLVFDADFDDYMSFLCSLPGVDEASVREATGMGCSSR-MTWASDLNTASITVGNLMGSRKVHRVVKNVAADYSKEVYEANITEPEGVKVKVKPRKFTIHKGSSKSLLVTLKVKVATGTFVFGEIVLTGNRDHLVSIPLAV
B9SEE1_______________MASTITFAFFIFVVKFFELLQIEAKVFMILMDEEPVFAFKSK---------YTNPRIEEVMDYKESLSN----SHDLFLESLLQKGTYTKLYSYTHLLNGVAVHVESEEVSSILKNARGVRAIHEDTKMEKLTTHTPDFLGIPAGIWPSLGGPERSGEGVVIGMIDTGINPYHPSFTN-------MSMGSINSTK----FRGQCATGENFPLTACNGKIVGAQYFARAAIAAGDFITSRDFASPFDADGHGSHTASTAAGNHQIPVIANDFNYGNASGMAPGARIAVYKALYTFGGYMSDVVAAVEKAVEDGVDILSLSIGPSSVPPGPSAFLNVLEMELLFATKAGIFVVQAAGNGGPSSSSVLSFSPWITSAAASITDRKYNNTIILGNGKSFSGTGLAPPTSGEVPFLLAAAADVSHGNVTSVVEVESCQHPEHFIKSLVWEKLIICTYTFDFEYEDASIATVEDTIQQIGAAGFIITMDPDISSEQIKGTTMTMRVPAIILNTMQASSALWEYYNSNTIRSRSGQAVAFSATARILDGRQAFFTGQAPIVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPDSEGDPYVKGQNFALVSGTSMATPHIAGVAALIKQKHPKWSPAAITSAMMTTADTTDCFGSPILAQS---------SNQLAPATPFDFGAGSINPARAIDPGLIFDARFEHYVQFLCAVPGVDDESVRRAVGIGCPIRGRAWCSDLNTASVTISNLVGSRKVIRRVTNVSR--RNEVYRVTVREPLGVNVTVKPQVFWVRGNASRHFRILLKARKAMRTYTFGEIILYGSRNHVVRVPIAV

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
470		33		66	0.997452
548		20		80	0.995493
623	20		80		0.995493
657	20		80		0.995493
772	16	83			0.994512
774			16	83	0.994512
775			16	83	0.994512
776		83	16		0.994512
992		25		75	0.996473
1032	66		33		0.997452
1155		12		87	0.992554
1163		12		87	0.992554
1301		85		14	0.993533
1415		87	12		0.992554
2114		33		66	0.997452
2138		60	40		1.0
2271	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain