SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16964

Length: 1191 nt

Origin of reads: Inia v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene16964 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PPR multi-domain protein	-	-	2.0e-06	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Blast2go	protein	-	-	0.0	70%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	2,3-diketo-5-methylthio-1-phosphopentane phosphatase	IPR010041	-	-
Sma3		IPR011523	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3		IPR018115	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg:

Fln protein: MHLADMKMNQMTFASVLRACATLAALEQGKQFHALIIKNGSDSDMSVCNAFVTMYAKCASIEDSCRVFDKSDKQDVITWNAMIAGLAQHGQGKEAVELFEQMQLTGIKPNHLTYVGILSACSHGGLIEKGHYYFDSMVRDHGIRPREEHYSCMVDLLARAGQLVDAESFINKMPFKPGPLVWRTLLSACRIHGNVELGKRSAECLLKLEPQDTATYVLLSNIYASTGRWDDRAHVRKMMKDRRVNKEPGCSWIQVKNRMHTFLAGDRSHPQTEEIYAELERLNKQLEEIGYGTDRNLVLHHIIQEPSVHHHSEKLAIAFGLINTISGTPIWIIKNLRVCSDCHTAIKFISKLVSWKFVVRDDHCFHHFNNGMCSNGVYW*

Protein Length: 381

Fln nts: CCTTGAAGCTCTCTTGTCAA_-_ATGCATCTTGCAGATATGAAGATGAATCAGATGACCTTTGCCAGTGTTCTTAGGGCATGTGCCACCCTAGCGGCTCTTGAACAGGGAAAACAGTTTCATGCCCTAATCATTAAGAATGGATCAGATTCAGATATGTCTGTATGTAACGCGTTTGTTACCATGTATGCCAAATGTGCAAGTATAGAGGATTCATGCAGAGTGTTTGACAAAAGCGATAAACAGGATGTGATTACATGGAATGCAATGATTGCAGGTTTAGCCCAGCATGGGCAGGGTAAAGAAGCCGTTGAATTGTTTGAACAGATGCAATTAACGGGAATAAAGCCAAATCATCTCACCTACGTTGGTATTCTTTCTGCATGCAGTCATGGAGGCCTGATAGAAAAAGGTCATTACTACTTTGATTCCATGGTTAGAGATCATGGCATCAGACCAAGAGAGGAGCATTATTCTTGCATGGTTGACCTTCTTGCTCGTGCTGGCCAGTTAGTCGATGCAGAGTCTTTTATTAACAAAATGCCATTTAAACCTGGTCCTCTGGTATGGCGAACCTTGCTAAGTGCTTGCAGAATCCACGGCAATGTAGAGTTGGGAAAACGTTCTGCAGAATGTCTCCTTAAGTTGGAACCACAAGACACAGCGACATACGTGTTGCTCTCAAATATCTATGCCTCTACTGGCAGATGGGATGACAGAGCACATGTAAGGAAAATGATGAAAGACAGGAGGGTGAATAAGGAGCCAGGATGCAGCTGGATTCAGGTGAAGAACAGGATGCATACATTTCTAGCGGGAGACAGATCTCATCCCCAAACAGAGGAGATCTACGCAGAACTGGAGAGATTAAACAAGCAGTTAGAGGAAATAGGTTATGGGACTGACAGGAACCTTGTTCTACATCATATCATACAAGAGCCATCCGTCCATCATCATAGTGAGAAACTTGCAATTGCTTTTGGTCTCATCAACACAATCTCAGGGACCCCTATTTGGATAATAAAAAACCTTCGTGTGTGCAGTGACTGCCACACTGCCATCAAGTTCATCTCCAAGCTTGTTAGTTGGAAATTTGTTGTGCGAGATGACCACTGCTTCCATCATTTCAATAATGGCATGTGTTCCAATGGGGTATACTGGTAA___TGTTTTAGAGTAAGTGTGATTGGCAATCTTC

Fln Alignment:

Contig16964___ASVLRACATLAALEQGKQFHALIIKNGSDSDMSVCNAFVTMYAKCASIEDSCRVFDKSDKQDVITWNAMIAGLAQHGQGKEAVELFEQMQLTGIKPNHLTYVGILSACSHGGLIEKGHYYFDSMVRDHGIRPREEHYSCMVDLLARAGQLVDAESFINKMPFKPGPLVWRTLLSACRIHGNVELGKRSAECLLKLEPQDTATYVLLSNIYASTGRWDDRAHVRKMMKDRRVNKEPGCSWIQVKNRMHTFLAGDRSHPQTEEIYAELERLNKQLEEIGYGTDRNLVLHHIIQEPS---VHHHSEKLAIAFGLINTISGTPIWIIKNLRVCSDCHTAIKFISKLVSWKFVVRDDHCFHHFNNGMCSNGVYW
A9P0W0_______________AGILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSWIEVQNKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYIPNTNFVLHDVEEEQKEWILGHHSEKLAIAFGIISTPPGTTIRVVKNLRVCGDCHTATKFISRIVSREIVLRDTHRFHHFKDGQCSCGDYW

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
470	80		20		0.995493
550	87		12		0.992554
893		12		87	0.999964
982	88	11			0.923564
1004	11		88		0.923564
1006		88		11	0.923564
1019	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain