SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16910

Length: 1428 nt

Origin of reads: Inia v1 Biogeco1 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene16910 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cinnamoyl-CoA reductase, putative n=1 Tax=Ricinus communis RepID=B9SC77_RICCO	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	47%
Blast2go	bifunctional dihydroflavonol 4-reductase flavanone 4-reductase-like	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	seed development	GO:0048316	Biological Process	80%
Blast2go	meristem structural organization	GO:0009933	Biological Process	80%
Blast2go	sporopollenin biosynthetic process	GO:0080110	Biological Process	80%
Blast2go	leaf development	GO:0048366	Biological Process	80%
Blast2go	tRNA modification	GO:0006400	Biological Process	80%
Blast2go	calmodulin binding	GO:0005516	Molecular Function	80%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	-
Sma3	NmrA-like	IPR008030	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQE0

Fln msg:

Fln protein: MSMAQTREKDDVSITNSKGLVCVTGAAGYLASWLIKRLLQRGYHVRGTVRDPGNEKKMGHLWKLDGAKERLQLMKADLMDEGSFDEVIRGCHGVFHTASPVVGVKSDPKAEIVDPAVRGTLNVLRSCKRSPSVRRVVLTSSSSAVRARDDFDPSVPLDESSWSSVELCEKLQIWYALAKTLAEKAAWDFAEENNLDMVAVLPTFVIGPSLPPSLCSTASDVLGLLKGETQKFTLHGRMGYVHIDDVAGCHILVYEEPTAKGRYICSSAVLENYELGAMLADCYPHLNVPTQFENVWGDRAYYNYNTSKLRALGFEFKSIQEMFQDCIESLKEQGHI*

Protein Length: 338

Fln nts: ATGGGGAATATGGGGTGTATTGCTCTTTCATTTTTTCTGTGGTAAAC_-_ATGTCTATGGCTCAAACCAGAGAGAAGGACGACGTTAGCATAACAAACTCCAAAGGATTGGTGTGCGTGACAGGAGCGGCTGGTTACTTGGCATCTTGGCTTATCAAGCGTCTCCTCCAGCGTGGTTACCATGTGAGAGGAACTGTGCGGGATCCTGGCAATGAGAAAAAGATGGGTCATTTATGGAAGTTAGATGGGGCGAAAGAGAGACTGCAACTAATGAAAGCTGATCTAATGGACGAGGGCAGCTTCGATGAAGTCATCAGAGGCTGCCATGGTGTTTTTCACACAGCGTCTCCAGTTGTGGGTGTCAAATCAGATCCCAAGGCTGAGATTGTTGACCCAGCCGTTAGAGGAACTCTGAACGTACTTAGATCTTGCAAGAGAAGTCCCTCAGTAAGGCGAGTGGTACTCACTTCTTCATCTTCCGCCGTCAGAGCCAGAGATGATTTCGATCCATCTGTGCCTCTGGACGAATCCAGCTGGAGCTCTGTCGAACTTTGTGAAAAATTACAGATATGGTATGCTCTGGCCAAGACTTTAGCAGAAAAAGCAGCATGGGATTTTGCGGAAGAAAACAATCTGGACATGGTTGCAGTTCTTCCCACATTTGTAATTGGGCCAAGTCTTCCTCCTAGCCTGTGCTCAACTGCATCTGATGTCCTTGGTTTGTTAAAAGGAGAAACGCAGAAATTTACTCTGCACGGACGAATGGGATACGTTCACATTGACGACGTTGCTGGTTGTCACATTCTGGTATATGAGGAACCCACTGCCAAAGGACGTTACATATGCTCCTCTGCTGTGCTCGAAAACTATGAGCTGGGAGCCATGTTAGCAGACTGTTATCCACATCTCAACGTTCCCACACAATTCGAGAACGTTTGGGGAGACAGAGCTTACTACAATTACAACACCTCCAAGTTGAGAGCTCTAGGTTTCGAATTCAAGAGCATACAAGAGATGTTCCAGGATTGTATTGAATCGCTTAAAGAGCAGGGCCACATTTAA___AACTATAGAAACCCAGAGAAGGAAAACAAAAATTCATCATTAGGAGGCAACAAACAATTCATAACCTGCCTTATTTATAATAATATTTTATTATTATGAGAACTTTTCTCGATTCATCTGTTCTTTTTAATAGTATCTCTGAGATGATGAATAAGATGGAAAGTGTTTACTCAACATAATTCTTGTATATACAGTTAGTGTGCTCTCCTTCAGCATAATAAAGGTGGTTTTGCTCTCTCATTTACTCTTGTATATACAGTTAGTGTGTTCTCCTTCAGCATAATAAAGGTGGTTTTGCTCTCTCATTTACTCTTGTATATACAGTTAGTGTGCTCTCCTTCAGCATAATAAAGGTGGTTTTGCTCTCTTT

Fln Alignment:

Contig16910___KGLVCVTGAAGYLASWLIKRLLQRGYHVRGTVRDPGNEKKMGHLWKLDGAKERLQLMKADLMDEGSFDEVIRGCHGVFHTASPVVGVKSDPKAEIVDPAVRGTLNVLRSCKXXXXXXXXXXXXXXXXXXXRDDFD-PSVPLDESSWSSVELCEKLQI--W-YALAKTLAEKAAWDFAEENNLDMVAVLPTFVIGPSLPPSLCSTASDVLGLLKGETQKFTLHGRMGYVHIDDVAGCHILVYEEPTAKGRYICSSAVLENYELGAMLADCYPHLNVPTQFENVWGDRAYYNYNTSKLRALGFEFK-SIQEMFQDCIESLKEQG
C0PQE0_______________RGTVCVTGAAGFIGSWLIMRLLERGYTVRATVRDTGKPLKTKHLLDLPGANERLTLWKADLDDEGSFDAAVDGCEGVFHVATPMDFESEDPENDIIKPTVNGVLNVMKSCAKAKSVKRVVFTSSAGTVNFTDDFQTPGKVFDESCWTNVDLCRKVKMTGWMYFVSKTLAEKAAWDFAEENKIDLLTVIPTLVVGPFIMQTMPPSMITALALLTRNEPHYMILRQVQLVHLDDLCMSHIFVYEHPEAKGRYISSTCDATIVQVAKMLAQKYPEYNVPTKFKDADESLPAVPFSSKKLLDLGFKFNYTMEEMFDGAIQCCREKG

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
549		11		88	0.923564
550	88	11			0.923564
556			88	11	0.923564
557	11	88			0.923564
595	87		12		0.992554
855		16	83		0.994512
888		66		33	0.997452
1358	40	60			1.0
1362		60		40	1.0
1402	40			60	1.0
1415	70	20			0.999999
1417	50	20			1.0
1418	40	40			1.0
1419		60		40	1.0
1421	20	80			0.995493
1422	80	20			0.995493
1423		20		80	0.995493
1424	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain