SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16864

Length: 2270 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene16864
ATCCATATCTATCAAGAATGGCTCCTCTGCTAAAATTGCTGCTCAGACTTTTACATTTCGGGAGCTTGCGGCAGCTACCAAAACTTCAGACCTGAAAGCCTCCTTGGTGAAGGAGGTTTTGGACGAGTTTACAAGGGGCGCTTAGAAAGCACTGGCCAGGTTGTGGCTGTTAAACAACTTGATAGAAATGGGCTTCAAGGAAACAGGGAATTTCTTGTAGAAGTTCTTATGCTCAGTCTTCTACATCATTCTAATCTTGTCAACTTGATTGGTTACTGCGCTGATGGTGATCAGCGGCTTCTTGTCTATGAGTATATGCCTTTGGGTTCCCTGGAAGATCATCTTCATGATGTTCCACCTGATAAGGAACCTTTGGATTGGAACACAAGAATGAAGGTTGCAGCTGGTGCTGCTAAAGGACTGGAGTATTTGCATGATAAAGCAAATCCACCAGTTATTTATCGTGATTTTAAATCCTCTAACATATTGCTTGATGAGGGGTTTCATCCAAAGCTATCTGATTTTGGGCTTGCAAAACTTGGTCCAGTTGGAGATAACACACACGTCTCTACAAGAGTAATGGGTACATATGGTTATTGTGCGCCAGAGTATGCTATGACAGGTCAGCTGACTCTCAAATCTGATGTCTACAGTTTTGGTGTGGTTTTCTTGGAGTTGATTACAGGAAGAAAGGCCATCGATAATTCTAGGAGTGCTGGAGAGCAAAATCTTGTGGCTTGGGCACGACCCATGTTCAAGGATCGCAGGAAGTTTCCTAAAATGGCTGACCCTTTGCTACAAGGTCGTTACCCAATGCGGGGCTTGTATCAGGCCCTTGCTGTTGCTGCAATGTGCCTCCAGGAACAAGCTTCTACTCGACCTCTTATTGGTGATGTTGTGACTGCTCTGTCTTACTTAGCTTCTCAAACATACGAGACTGGAGTGGTTCCTCTTAACAGCAGTAGAATTGGTCCCCAACCTGTTAGAGATAAAGACGAGAAGTCAAGTGGCAGAACAGAGGACCAGGATGAAATGGATCAGAACAAATCTGAGAACATGCGTGGCAGGTCCCGGTCACCATCCCAAAACTCTTCTGATTTTCACCACAAGGAAACTGGATGGCAACGCCCAGGCACTGGATCTGAAGCTACAAAGAGTCAAGGATGGCAGTCAGGAAGGAAGCTTGGCATGGATGATTTAGAGAGACAAGTTGAAAGGGACAGCCCTGGTCACACAGGAAAAACAAGAGGACAGAAAAATTCTAGTCGAGACCGTGAGCATGCTGTTGCTGCAGCTAAAGAATGGGGTGAAAACTGGAGAGAGAAGACAAAAGGAAGTCAACAGGGTAGTTTTGATGGGAGCATTGGATAACCAGCTTTTAGTATTATTCATATGGTCAAAATTATGTTATTTCCATTGCAGATCTCTTTTTTAGATGTCATGCTTTGATTCTTATAGCATTAATCAGGTTCATTGATCGTGAACCTTACGGAAACAGATTTCATCTTGTTTGCTGATGAATAGAGAACTGTCTTGGTTTTAGTATTTGGAAATTGCTGGGATAATGCTAGAGAGCTACTACAGTGGAAGAATGAATTATATGCAGAGGCTTTGCCTGTTTGGATGCTTCAATTCCCTAGCAATTTAGTATCCAAGGAAGAGCTCTCCAAATACATGGCTTGTAACAGAGAAACATTTCACGTGACTCTGTTTACCTGTGCTCATAAACTAGATTAAAGCATTTCAGTTTGAAGACAGTGGAGAAAACTTTGGTGGACCGGTGGAAAGAACTAGGCAAGTTGATCTAGTGAGTGTTCCTTAAAAACTATTGAGAGTACAAGGATTTGGATGTGATGTGTATCTTTGAACAGTTGAAATTTCATCAGCGAGGTAGGTAAGAATGCACTGATCATGTGCATATTGTATTCATTTATTGCTTAGGCAGCATCAAATTTAGAAAATTAATATTTATTTTTGGTACTGACAGAGTTACCTTCACTGTTTGGAACCTTCTAGAATTGTTGGTTGAGGCCCAGTTTCATTGTGATATGTCCTTATACTTGATCAGTAGGAACTAGTGAACGTTACCATGCATATTGAAGCAAGCGTTTATTATTTCAAGTTATATTATAATAGTTTGTAATGTGCTGTGTTTCTGCAATATGGTCTCCTGCTATCCAGTACACTTTTAAACAATTGCAGAAACGCATTTTCCAAATATTTTCAGTGAAATAATATGTTTGACTTACTTGGTCAAAGTCTTTGGGTGC

Ace file of the UniGene sp_v2.0_unigene16864

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Receptor serine-threonine protein kinase, putative n=1 Tax=Ricinus communis RepID=B9RT11_RICCO	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	protein kinase family protein	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	kinase activity	GO:0016301	Molecular Function	0.0	80%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	80%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAA3

Fln msg: Unexpected stop codon in the beginning of your sequence,

Fln protein: IHIYQEWLLC*NCCSDFYISGACGSYQNFRPESLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHSNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDVPPDKEPLDWNTRMKVAAGAAKGLEYLHDKANPPVIYRDFKSSNILLDEGFHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNSRSAGEQNLVAWARPMFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQASTRPLIGDVVTALSYLASQTYETGVVPLNSSRIGPQPVRDKDEKSSGRTEDQDEMDQNKSENMRGRSRSPSQNSSDFHHKETGWQRPGTGSEATKSQGWQSGRKLGMDDLERQVERDSPGHTGKTRGQKNSSRDREHAVAAAKEWGENWREKTKGSQQGSFDGSIG*

Protein Length: 458

Fln nts: ATCCATATCTATCAAGAATGGCTCCTCTGCTAAAATTGCTGCTCAGACTTTTACATTTCGGGAGCTTGCGGCAGCTACCAAAACTTCAGACCTGAAAGCCTCCTTGGTGAAGGAGGTTTTGGACGAGTTTACAAGGGGCGCTTAGAAAGCACTGGCCAGGTTGTGGCTGTTAAACAACTTGATAGAAATGGGCTTCAAGGAAACAGGGAATTTCTTGTAGAAGTTCTTATGCTCAGTCTTCTACATCATTCTAATCTTGTCAACTTGATTGGTTACTGCGCTGATGGTGATCAGCGGCTTCTTGTCTATGAGTATATGCCTTTGGGTTCCCTGGAAGATCATCTTCATGATGTTCCACCTGATAAGGAACCTTTGGATTGGAACACAAGAATGAAGGTTGCAGCTGGTGCTGCTAAAGGACTGGAGTATTTGCATGATAAAGCAAATCCACCAGTTATTTATCGTGATTTTAAATCCTCTAACATATTGCTTGATGAGGGGTTTCATCCAAAGCTATCTGATTTTGGGCTTGCAAAACTTGGTCCAGTTGGAGATAACACACACGTCTCTACAAGAGTAATGGGTACATATGGTTATTGTGCGCCAGAGTATGCTATGACAGGTCAGCTGACTCTCAAATCTGATGTCTACAGTTTTGGTGTGGTTTTCTTGGAGTTGATTACAGGAAGAAAGGCCATCGATAATTCTAGGAGTGCTGGAGAGCAAAATCTTGTGGCTTGGGCACGACCCATGTTCAAGGATCGCAGGAAGTTTCCTAAAATGGCTGACCCTTTGCTACAAGGTCGTTACCCAATGCGGGGCTTGTATCAGGCCCTTGCTGTTGCTGCAATGTGCCTCCAGGAACAAGCTTCTACTCGACCTCTTATTGGTGATGTTGTGACTGCTCTGTCTTACTTAGCTTCTCAAACATACGAGACTGGAGTGGTTCCTCTTAACAGCAGTAGAATTGGTCCCCAACCTGTTAGAGATAAAGACGAGAAGTCAAGTGGCAGAACAGAGGACCAGGATGAAATGGATCAGAACAAATCTGAGAACATGCGTGGCAGGTCCCGGTCACCATCCCAAAACTCTTCTGATTTTCACCACAAGGAAACTGGATGGCAACGCCCAGGCACTGGATCTGAAGCTACAAAGAGTCAAGGATGGCAGTCAGGAAGGAAGCTTGGCATGGATGATTTAGAGAGACAAGTTGAAAGGGACAGCCCTGGTCACACAGGAAAAACAAGAGGACAGAAAAATTCTAGTCGAGACCGTGAGCATGCTGTTGCTGCAGCTAAAGAATGGGGTGAAAACTGGAGAGAGAAGACAAAAGGAAGTCAACAGGGTAGTTTTGATGGGAGCATTGGATAA___CCAGCTTTTAGTATTATTCATATGGTCAAAATTATGTTATTTCCATTGCAGATCTCTTTTTTAGATGTCATGCTTTGATTCTTATAGCATTAATCAGGTTCATTGATCGTGAACCTTACGGAAACAGATTTCATCTTGTTTGCTGATGAATAGAGAACTGTCTTGGTTTTAGTATTTGGAAATTGCTGGGATAATGCTAGAGAGCTACTACAGTGGAAGAATGAATTATATGCAGAGGCTTTGCCTGTTTGGATGCTTCAATTCCCTAGCAATTTAGTATCCAAGGAAGAGCTCTCCAAATACATGGCTTGTAACAGAGAAACATTTCACGTGACTCTGTTTACCTGTGCTCATAAACTAGATTAAAGCATTTCAGTTTGAAGACAGTGGAGAAAACTTTGGTGGACCGGTGGAAAGAACTAGGCAAGTTGATCTAGTGAGTGTTCCTTAAAAACTATTGAGAGTACAAGGATTTGGATGTGATGTGTATCTTTGAACAGTTGAAATTTCATCAGCGAGGTAGGTAAGAATGCACTGATCATGTGCATATTGTATTCATTTATTGCTTAGGCAGCATCAAATTTAGAAAATTAATATTTATTTTTGGTACTGACAGAGTTACCTTCACTGTTTGGAACCTTCTAGAATTGTTGGTTGAGGCCCAGTTTCATTGTGATATGTCCTTATACTTGATCAGTAGGAACTAGTGAACGTTACCATGCATATTGAAGCAAGCGTTTATTATTTCAAGTTATATTATAATAGTTTGTAATGTGCTGTGTTTCTGCAATATGGTCTCCTGCTATCCAGTACACTTTTAAACAATTGCAGAAACGCATTTTCCAAATATTTTCAGTGAAATAATATGTTTGACTTACTTGGTCAAAGTCTTTGGGTGC

Fln Alignment:

Contig16864___QNFRPESLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEXXXXXXXXXXXXXXXIGYCADGDQRLLVYEYMPLGSLEDHLHDVPPDKEPLDWNTRMKVAAGAAKGLEYLHDKANPPVIYRDFKSSNILLDEGFHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNSRSAGEQNLVAWARPMFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQASTRPLIGDVVTALSYLASQTYETGVVPLNSSRIGP----QPVRDKDEK--SSGRT
D5AAA3_______________KNFRPECLLGEGGFGRVYRGRLESTGQAVAVKQLDRNGVQGNREFLVEVLMLSLLHHDNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDLPPDKEPLDWKTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLDEGYHSKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTIKSDVYSFGVVLLELITGRKAIDNSRSAGENNLVAWARPLFKDRRKFSQMADPLLQCRYPMRGLYQALAVAAMCVQEQATMRPLIADVVTALTYLASQTYDPETHPVINSRFGPPTPSRAKRDNEKKLTSSART

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
649		11		88	0.992527
653			11	88	0.992527
654	87			12	0.993502
655		87	12		0.993502
656	87	12			0.995041
657		12	87		0.993502
658		12		87	0.993502
661			12	87	0.993502
663		12	87		0.993502
667	12		87		0.993502
668		12	87		0.993502
669	12			87	0.995041
670	12			87	0.993502
793	12	87			0.993502
829	16		83		0.995451
830		16		83	0.995451
833		83		16	0.995451
1428			20	80	0.995493
1602		11		88	0.923564
1603	88		11		0.923564
1605	88		11		0.923564
1609	88	11			0.923564
1610			88	11	0.923564
1611	88			11	0.923564
1617		11		88	0.923564
1618	11		88		0.923564
1621	11			88	0.923564
2059		25		75	0.996473
2097		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain