SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16861

Length: 835 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene16861 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Aquaporin TIP2-1 n=4 Tax=Brassicaceae RepID=TIP21_ARATH	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	delta tonoplast intrinsic protein	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	urea transport	GO:0015840	Biological Process	84%
Blast2go	water transport	GO:0006833	Biological Process	84%
Blast2go	ammonia transmembrane transporter activity	GO:0051739	Molecular Function	84%
Blast2go	methylammonium transmembrane transporter activity	GO:0015200	Molecular Function	84%
Blast2go	urea transmembrane transporter activity	GO:0015204	Molecular Function	84%
Blast2go	water channel activity	GO:0015250	Molecular Function	84%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	84%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	84%
Blast2go	plant-type vacuole membrane	GO:0009705	Cellular Component	84%
Blast2go	central vacuole	GO:0042807	Cellular Component	84%
Blast2go	plasma membrane	GO:0005886	Cellular Component	84%
Blast2go	protein storage vacuole	GO:0000326	Cellular Component	84%
Blast2go	methylammonium transmembrane transport	GO:0072489	Biological Process	84%

Source	InterPros	Term	Type	Identity
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Aquaporin	IPR012269	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Archaeal flagellin, N-terminal	IPR013373	-	-

Full-Lengther Next Prediction

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
601	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain