SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16827

Length: 1797 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene16827 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Xenotropic and polytropic murine leukemia virus receptor ids-4, putative n=1 Tax=Ricinus communis RepID=B9SES9_RICCO	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	spx domain-containing protein 2	-	-	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	0.0	61%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	61%

Source	InterPros	Term	Type	e value	Identity
Sma3	SPX, N-terminal	IPR004331	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNU0

Fln msg: your sequence is longer than subject: 353 - 238

Fln protein: MKFGKRLKSQIEDTLPKWRDKFLAYKYLKKLVNSMSTAREASPSSGSDEIRGGSDERPNKRQKVSAGPVEAGAASDDYLPAFVIDFECNKRKMTAEESDFVDLLNAEIDKFNSFFMEQEEEYIIRQKELQDRIERLKSNSRQKGAVFSETEYNEEMIKLRKDIVNFHGEMVLLENYSALNYTGIAKILKKYDKRTGGLLRHPFIQKVLQQPFFTTEQLSKLIRECENTLQSLFPDYPQSILQVPASPSSNGNHVETSASTGKSDSQRLRVPLAATTKEEFGEENALFKGRGDEDGDCDAEGMESIYRSTMAALRTMKEIRRGSSTYSVFSLPPLDETKSMPLCSLIPICPKN*

Protein Length: 354

Fln nts: TCCACCCTCGCCTCCAATTTTTGGTGGCAAACTACTGAACTTGTGACCAATTTTATGATTCTTGTTTGCTCTTTAATGTGAGCCCATGGTTTTTGCAGCTACAGTTTGTACTCTGAGGAAATTCCACTGGTTTTGGGGTTTCGACACTTATGACGATTCGAACTCGTGACCTTACCGCTTCTTGTTCTTGGTTGGATTTTTGGCTTTGGCGATGGATTTAGATCTTTAAATCTCCGTTTCTTGACTCTTGACGCTAGACAGCTATTTTCTTTGGTATTCTGGTTCCTTAGGCGGAAATGACTTCTTCTGGCCAAATGGAAACATTTCTCAGGCAGTGAGGCCTGCGGTATTATTGTAATTTGCAGAGTATAATTCTTTTGGGAGGAGGAGAACTCTTTGGCACTGAGATC_-_ATGAAGTTTGGCAAAAGATTGAAGAGTCAGATCGAGGATACATTGCCAAAATGGCGAGATAAGTTCCTGGCTTATAAATACTTGAAGAAGCTCGTCAATTCTATGTCTACTGCAAGGGAGGCTTCGCCTTCCTCTGGTAGCGATGAGATCCGGGGCGGTTCCGATGAACGTCCCAACAAAAGGCAAAAGGTCTCTGCCGGACCTGTTGAAGCAGGCGCTGCTTCAGATGACTATCTACCCGCCTTTGTTATAGATTTCGAATGCAATAAGCGAAAAATGACTGCGGAGGAGTCTGACTTCGTTGATTTGCTGAATGCTGAGATCGACAAGTTTAATTCCTTCTTTATGGAGCAAGAAGAAGAATACATCATCCGTCAGAAGGAGCTGCAGGACAGGATCGAAAGGTTGAAGAGCAACAGTAGACAGAAGGGGGCAGTTTTCTCTGAAACCGAGTACAACGAAGAAATGATCAAATTGAGGAAAGACATTGTGAATTTTCATGGCGAGATGGTTCTGCTCGAGAATTACAGCGCTCTCAACTATACAGGGATTGCGAAGATTTTGAAGAAATATGACAAGAGAACGGGCGGGTTACTGCGCCATCCCTTCATTCAGAAGGTTCTGCAACAACCCTTTTTCACCACTGAACAACTCTCTAAGCTCATCAGAGAATGTGAGAACACACTCCAAAGTTTATTTCCAGATTACCCTCAAAGCATTCTTCAAGTACCTGCAAGTCCGTCCAGCAATGGAAACCATGTAGAAACATCTGCTTCTACTGGTAAAAGCGATTCGCAGAGGCTACGAGTACCGCTGGCGGCAACGACCAAAGAGGAATTTGGGGAGGAGAATGCATTGTTTAAAGGCAGGGGGGATGAGGATGGGGATTGTGATGCGGAAGGTATGGAAAGCATATACAGAAGCACCATGGCTGCGCTACGGACCATGAAAGAAATACGCAGAGGGAGCTCTACCTACAGTGTCTTTTCCTTGCCCCCTTTGGATGAGACCAAATCTATGCCGCTCTGTTCTCTCATCCCCATCTGCCCCAAAAACTAA___TACTCCCTCCAAGTCCCTATAGGCTAACACACTATTCTTGCATAAAAAATACAGAAATCTATAGAAATTAGTTTAAGGTATATGTAAGTTCGTCTACAGATGGAAGCTCTTGATCTCTCAGTGTTCTGCAAGTTGGAAGAAATATGAAATTTGTAATATCCATGCAGAATTATTTTCAAATTTCAGAGTTGAGCTTAACGTATAAGCTCTACGTTGTCCACCCCTCCTGTTACCATTCCTAAGGAGATAAAGTACAGTGTAGTTTTGATGTCTTCTTTTCTTGATTGGTGCACAATTTTAGCAAAATTTTACTTACAGAGTATATGAT

Fln Alignment:

Contig16827___MEQEEEYIIRQKELQDRIERLKSNSRQKGAVFSETEYNEEMIKLRKDIVNFHGEMVLLENYSALNYTGIAKILKKYDKRTGGLLRHPFIQKVLQQPFFTTEQLSKLIRECENTLQSLFPDYPQSILQVPASPSSNGNHVETSASTGKSDSQRLR-VPLAATTKEEFGEENALFKGRGDEDGDCDAEGMESIYRSTMAALRTMKEIRRGSSTYSVFSLPPLDETKSMPLCSLIPICPKN
B8LNU0_______________MEQEEEYIIRQKELQDRIEKLKSNSRQNATVFSQTEYNEEMIKLRKDIVNFHGEMVLLENYSALNYTGLAKILKKYDKRTGGLLRHPFIQKVLQQPFFTTEQLSKLISECENTLQSLFPDYPKSLLQVPAGPSSNGNQAEASSSAGNSDLQRLREPPPAATTQAEFGEENSPLKGKGDEDGDRDAEGMESIYRSTMAALRTMREIRRGSSTYSVFSLPPLDETKSIPLCSLIPICPKN

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
706	8			92	0.999718
709			8	91	0.999807
711	8			91	0.999807
716	8			91	0.999807
717			9	90	0.999872
718		90	9		0.999872
721	9			90	0.999872
724		9		90	0.999872
754	80		6		0.999961
780	88		11		0.923564
782		11	88		0.923564
846	14			85	0.993533
847	85			14	0.993533
854	83			16	0.994512
856	16	66		16	0.988813
859	33			66	1.0
861		33		66	1.0
864			33	66	1.0
867	33			66	1.0
1310			33	66	0.997452
1311		33		66	0.997452
1312			33	66	0.997452
1673	11		88		0.999952
1676	76		23		1.0
1678			25	75	1.0
1679	25			75	1.0
1681	31	68			1.0
1683		25		75	1.0
1686	18	6	75		1.0
1687	75		18		1.0
1693	75		25		1.0
1695	68	25	6		1.0
1699		8	66	16	0.999991
1700			33	66	1.0
1702		16	66		0.999991
1703		75	25		1.0
1709	72	18		9	0.999994
1711	80		20		0.999996
1715	20			80	0.999996
1718			71	28	1.0
1720	28			71	1.0
1725	71		28		1.0
1749	80			20	0.995493
1769		25		75	0.996473
1778	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain