SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16824

Length: 1641 nt

Origin of reads: Inia v1 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene16824

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pfam01425, Amidase, Amidase	-	-	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	amidase family protein	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	74%
Blast2go	integral to chloroplast outer membrane	GO:0031359	Cellular Component	0.0	74%

Source	InterPros	Term	Type	Identity
Sma3	Amidase	IPR000120	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Glutamyl-tRNA(Gln) amidotransferase A subunit	IPR004412	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSB6

Fln msg: Unexpected stop codon in the beginning of your sequence,

Fln protein: AII*LWYWRELP*FAKASWYHNMVMLLGSGRFDIEGYVTGFGNPDWRRTHEPAVLTAPVVTFVVQGGATCVGRTVMDEMAYCICGENKHYGTPTNPAAPSRIPGGSSSGSAVAVAAELVDFALGTDTGASVRAPAAFCGILGFRPSHGAVSTIGVVPMAQSFDTVGLFTRDPNILRHVGHILLQLQFMEYRQPRRIIIADDCFQVTDIPNDRTVNVVTRSTEKLFGCQVLNHMSLGNYLATKVPSLKYFQNEEESRNGESGVSALKALWSALRLLQRYEFKMNHEEWINSVKPDFGPGISTRVHAALETNDENIGHCLKARDETREAINALLKDDAILIIPTTPGPAPKLNMKENLLEDFRGRAYTLLSISGMSGCCQVSIPVGQHDKCPLAVSMMARHGGDRFLLDTVRTMYPTLQEEVKIASSTQLTTTINGKMEAADIAKEESNGAWIPPCYR*

Protein Length: 458

Fln nts: GGGCAATAATTTAGCTGTGGTACTGGAGGGAATTGCCCTAGTTTGCAAAGGCAAGTTGGTATCATAATATGGTGATGTTACTGGGTTCAGGGAGATTTGATATAGAAGGATATGTAACTGGCTTTGGAAATCCAGACTGGCGAAGGACCCATGAACCTGCAGTTCTAACGGCACCTGTGGTTACATTTGTTGTACAAGGAGGAGCAACATGTGTTGGGAGAACTGTCATGGATGAGATGGCATACTGCATTTGTGGAGAAAACAAACACTATGGAACTCCAACTAATCCAGCTGCACCTTCACGAATACCTGGAGGATCTTCTAGTGGGTCTGCTGTGGCGGTTGCAGCTGAGCTTGTTGACTTTGCTCTTGGTACAGATACAGGAGCAAGTGTCAGAGCCCCTGCTGCATTCTGTGGTATTCTAGGGTTCCGTCCTTCCCATGGGGCTGTTTCCACCATTGGTGTTGTGCCAATGGCTCAGAGTTTTGATACTGTTGGTTTGTTTACAAGGGATCCAAATATTTTGCGTCATGTTGGTCATATACTACTACAGTTGCAATTCATGGAGTACAGGCAACCAAGGCGTATTATAATTGCAGATGATTGCTTTCAGGTTACAGATATTCCTAATGATCGAACAGTGAATGTAGTTACTCGGTCCACCGAAAAATTATTTGGATGTCAAGTTTTAAATCACATGAGCCTCGGCAATTATCTTGCTACCAAAGTTCCAAGCTTAAAGTATTTTCAAAATGAAGAAGAGAGCAGAAATGGTGAAAGTGGGGTTTCTGCTTTGAAGGCTCTTTGGAGTGCATTACGCCTTCTTCAGAGGTACGAGTTCAAAATGAATCATGAAGAGTGGATCAACAGTGTAAAGCCTGATTTTGGACCTGGTATATCTACTCGTGTACATGCAGCTCTAGAGACAAATGATGAAAATATTGGACATTGTTTGAAGGCCAGGGATGAGACACGTGAAGCAATTAATGCACTTTTGAAGGACGATGCAATCCTAATCATTCCCACAACTCCGGGTCCTGCACCTAAGCTCAATATGAAAGAAAATTTGTTGGAGGACTTTCGTGGAAGGGCCTACACACTGTTGAGTATATCTGGAATGTCTGGATGCTGTCAGGTGAGCATACCTGTAGGGCAACATGATAAGTGTCCTTTGGCTGTGTCAATGATGGCAAGGCATGGTGGAGATAGGTTTCTACTTGATACTGTACGGACAATGTATCCTACCCTTCAGGAAGAAGTGAAGATTGCTTCAAGCACACAGCTGACAACTACAATTAATGGCAAAATGGAGGCTGCAGATATTGCTAAGGAAGAGAGTAATGGTGCATGGATTCCTCCTTGCTATAGGTAA___GCATGTTCATGATGTAACTTAGGGTTTGCTAAAAAATATAATTTGTGCCTCCCACCATTGACTTTAACTCCCATATTACAAGTCGATTTCTGTTATATCGCTTTTGGCTTCTTATGGTAGTTCTTAGCATATAGGGGATATCCTTCGTGCTCTTACCCACGCTTAGCATGGAGATTTTTTTGTTTCTCCGGCTATTAATCCTTCTCAGAAAAACTATGGCTAGTGGGGTAAAGTCGATAATTTCAACCTGCAAGCTGCTTTCCATTAT

Fln Alignment:

Contig16824___FDIEGYVTGFGNPDWRRTHEPAVLTAPVVTFVVQGGATCVGRTVMDEMAYCICGENKHYGTPTNXXXXXXXXXXXXXXXXXXXXXELVDFALGTDTGASVRAPAAFCGILGFRPSHGAVSTIGVVPMAQSFDTVGLFTRDPNILRHVGHILLQLQFMEYRQPRRIIIADDCFQVTDIPNDRTVNVVTRSTEKLFGCQVLNHMSLGNYLATKVPSLKYFQNEEESRNGESGVSALKALWSALRLLQRYEFKMNHEEWINSVKPDFGPGISTRVHAALETNDENIGHCLKARDETREAINALLKDDAILIIPTTPGPAPKLNMKENLLEDFRGRAYTLLSISGMSGCCQVSIPVGQHDKCPLAVSMMARHGGDRFLLDTVRTMYPTLQEEVKIA
C0PSB6_______________FDIEGYVTGFGNPDWQQTHEPAAQTAPVVTFVVQGGATCVGRTVMDEMAYSINGENKHYGTPTNPAAPSRIPGGSSSGSAVAVAAELVDFALGTDTGGSVRVPASFCGILGFRPSHGAVSTVGVVPMAQSFDTVGLFTRDPNILRHVGHILLQLPFMEYRQPRGIIIADDCFQLTKIPNDQTVNVVTRSTEKLFGRQVLNHISLGEYIATEVPSLKYFQNEEESRDGECGISALKALCSALRLLQRYEFKMNHEEWINSVKPDLGPGISGRVRAALETNNENIEHCLKAKDEAREAVNSLLKDDAILIIPTTPGPAPKLNMKEMLLEEFRIRAFTLLCISGMSGCCQVSIPVGQHDKCPLAVSMMARHGGDRFLLDTVRAMYPTLQEEVKIA

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1187	12			87	0.992554
1281	85		14		0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain