SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16807

Length: 888 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene16807 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	T1N24.12 protein n=1 Tax=Arabidopsis thaliana RepID=Q9XH03_ARATH	-	-	7.0e-16	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Blast2go	atp binding protein	-	-	7.53856e-23	85%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	RIO-like kinase	IPR018934	-	-

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
560		25		75	0.996473
785	60		10		1.0
786		90	10		0.90298
789	10		90		0.90298
790	90	10			0.90298
791	90		10		0.90298
799			21	78	1.0
804	85	14			0.999981
805		14	85		0.999981
850		50		50	1.0
854			88	11	0.923564
859	11		88		0.923564
861		10	90		0.90298
862	87	12			0.992554
865	12	75	12		0.975346
866	14	14	14		0.979185
868		16	83		0.994512
870		16	83		0.994512
875	83		16		0.994512
878		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain