SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16720

Length: 2967 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene16720
CGTCGTGACCTTGGCTGTCACTCATGGGTCCCAACCTCTTTGGTAAAGCAAATTTGCGCAAGGAAATGAACGCAGGCCTTCCAAATGCTTTACGCGTACGGGAACTGATAGATGGCAATGGTCAATAACGCTGTGACACGACGAAGGGGAAATTGCCAGGAAACTTGATGCTTGCTGTGACGAAATTGAAAGGAAAATTGGCCCGAAACTTCATGCTTCCAAATTCCACAGTTCAGATTACACTATAACTTCAATATATATCGCCACTTGGTTTGCTCAATGGGTGAGAAGCTCAGTAATCAACCACATTCCAAAGCTGATTTGTTTTCAATCTTGTGCCCAACCATTGGGGTGTTGATACACAGGCAATAATAGCAAAGGTGCAGCTGGTAATTTCCTTGCCCTCCTGAATCTTTCAGACGCAAATATTGAGGCTCAGCGCACTTTCTATTATTCTGTATCCAATGGCAAACGTTAACTTTACCCCCGCCCGTGACGGAACATCCTCCGCATCCACCTCCCAGGGCAATACCAACAGCTATGTGTATCAAGTGTTTCTGAATCACCGCGGTCCTGATGTGAAGGAAGGACTCGCTACCGATATCTACCATCGCCTTAAAGATCTCGGATTATCAGTTTTTCTGGACCAGGAAGAACTGCAAAGAGGAGAGGAGTTGGATGCCCAAATCGAAGGGGCTATTCGAACCGCCTCTGTTCATGTAGCGATATTCTCTCCAAATTATGCTCAATCTAAATGGTGTCTCAATGAACTGGTATTGATGAGGGAACAGATGTTGAAGTCGGGGTCAACAATAATTCCGGTTTTCTACAAAGTCGAGCCCGCAGAAGTTCGGTGGGCGAGCGGCGAATATGGTCGACATCTTGGCAAGCTCGAACCACGACACAGCCACGAGACCATAAAAAAATGGATGGATACTCTTTTTGCTGTGGCGAATATAGTCGGTTTTGAGTTGAAGGACAAGGAAGAGTCGCAGCTCGTCCAGGAGGTCGTCCAACAGGTTGTGGAAAAGGCTCGCAAACCGCCTCTCGACGTCGCCAAATATCCTACTGGCCTCGATGAAAAAATTAAAGATGTGGACAGAACATTGTCACTGCAGCGGCAAAGCGAGAAGGCTACAATTTTGGGAATTGTAGGTTTTGGCGGGGTTGGGAAAACTACCCTGGCTACACAATTCTTCAACCGAGAGAGATCAAATTACAGTCGATCTTGCTTCTTATTTGATGTCAGATCTGAATATTTACCTTCCCTGCAGAGTAGCCTTCTTAAGGAGCTGATTAAATTCGATGCACAAATAAATAGCGTCGCTGAAGGCACAGGGATGCTCAAAGAGAGGCTCAAAAGAGATTCTCAACGGTCTCTTATCATTTTAGATGATATCGATCATATTGATCATCTGGATGCATTATGTGCACCCGTTATAGATACTATTCATGTAGGTAGCTTAATTTTAATTACATCTCGTAATAAGGATGTGCTTAGAAACTTCGGTATTGATGAGTCATCCATTTACACACTGGAACGCATCAAGCCAGAGCAATCGCAAGAGCTCTTTTGCTGGCATGCCTTCGGTCAACCCCGTCCTGTTGTAGGATTTGAAGAAGTTGTTGAGAAATTTTTGAATGTCTGCGATGGTTTGCCCCTGTCGCTTAGAGTGGTTGGGGCGCTTCTTCGTGGAGAAGATAAATTGAAGAATTGGAATGCGCAATTGCGCAAAACCTCCGGAGTACTTCCGGAACATATAGGGAGCACACTTAGAATTAGCTATAATGCTCTAGATGAAAAGGAAAAGCAAATATTTTTAGATATCGCCTGTTTCTTTATAGGGAAAGACAGGGATTCCGCTATAAGGGTAATGGGATGGATCCAACTGGGAAGGATTGCTGGGTCTTGAGAAGCTGGAAAACAGATGCCTCGTGGAGGTGGACGGTAAAAACTGTCTCAGAATGCACGACCACCTTCGAGACCTAGGCAGAGATATAGCTGAAGGTCAAGAACATCCCCGTTGTCTTTGGCACTTCACAGAGAATATGGCTCGTCCATCATTTGTGCGTGGAGTTAGCAGGTCCAACCGAAGCATGTTGCAGCTGTCTAGGACTGAAATTGACTCTGTTCAACGAATATTCAGCAGTGAACAGTTACCGCCGCTTGTATATCTGCACTGGGAGGACTGTCCGAAGTCCTCTTTAGCTCCCTCGATTCCTTTAAAATATCTGCGCTGGAAGCACTGTCTGAAGTCCTCTTTAGCTCCCTCGATTCCATTAAATAATTTAAGTGTGTTACATATACGGGGGTACCGACTGAAAACACTCTGGCAACATGAATTTCAGGCACCTCTGCAATTGAGGGAGTTGCATATTGATGCTCCCCTTTCAAAGGTTCCAAAGTCCATTGGAAAACTGAAGCACCTTGAAAAAGTTTTTCTGAAAGCTCCTAATCTTAAAACTATTTCAAATGAATTTTGTAACTTATCGGGACTCCAAAGTCTTCTGTTGGAGTGCGAGCAGCTGCAGACGCTACCAAAGTCGATTGGGAACCTGTCGGGCCTCCAAAGTCTTCACTTGGAACGGTGCTGGAGTCTGCAGACACTCCCAGACTCAGTGGGGAACCTGTCGGGCCTCCAAAGTCTTAAGTTGTACTGGTGCTCTAGTCTGCAGACACTCCCAGACTCAGTGGGGAACCTGTCGGGCCTCCAAAGTCTTCACTTGGAATGGGAATGGTGCTCCAGTATGCAGACACTCCCAGACTCAGTGGGGAACCTGTCGGGCCTCCAAAGTCCACTGAACCTGTCGGGCCTCAAAGTCTTTGGTCGGAGGGGTGGCGATTGAAACGGAAGAAGGGCTTGCCCCGGTGCGCTTGAAATTAAGATTGTTTTCAAATATTTCATTTGTTAATGTTAAGATGGTTCATTTTATGAAATATTTGTTAATGTTAAGATGGTTGATTTT

Ace file of the UniGene sp_v2.0_unigene16720 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative TIR-NBS-LRR protein n=1 Tax=Pinus monticola RepID=E9NZS6_PINMO	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	54%
Blast2go	tmv resistance protein n	-	-	58%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQE2

Fln msg: warning!, putative chimeric sequence! or repetitive structure Unexpected STOP codon at 3' end. Distance to subject end: 229 aas, your sequence is shorter than subject: 795 - 1071

Fln protein: MANVNFTPARDGTSSASTSQGNTNSYVYQVFLNHRGPDVKEGLATDIYHRLKDLGLSVFLDQEELQRGEELDAQIEGAIRTASVHVAIFSPNYAQSKWCLNELVLMREQMLKSGSTIIPVFYKVEPAEVRWASGEYGRHLGKLEPRHSHETIKKWMDTLFAVANIVGFELKDKEESQLVQEVVQQVVEKARKPPLDVAKYPTGLDEKIKDVDRTLSLQRQSEKATILGIVGFGGVGKTTLATQFFNRERSNYSRSCFLFDVRSEYLPSLQSSLLKELIKFDAQINSVAEGTGMLKERLKRDSQRSLIILDDIDHIDHLDALCAPVIDTIHVGSLILITSRNKDVLRNFGIDESSIYTLERIKPEQSQELFCWHAFGQPRPVVGFEEVVEKFLNVCDGLPLSLRVVGALLRGEDKLKNWNAQLRKTSGVLPEHIGSTLRISYNALDEKEKQIFLDIACFFIGKDRDSAIRVMGWIQxxEGLLGLEKLENRCLVEVDGKNCLRMHDHLRDLGRDIAEGQEHPRCLWHFTENMARPSFVRGVSRSNRSMLQLSRTEIDSVQRIFSSEQLPPLVYLHWEDCPKSSLAPSIPLKYLRWKHCLKSSLAPSIPLNNLSVLHIRGYRLKTLWQHEFQAPLQLRELHIDAPLSKVPKSIGKLKHLEKVFLKAPNLKTISNEFCNLSGLQSLLLECEQLQTLPKSIGNLSGLQSLHLERCWSLQTLPDSVGNLSGLQSLKLYWCSSLQTLPDSVGNLSGLQSLHLEWEWCSSMQTLPDSVGNLSGLQSPLNLSGLKVFGRRGGD*

Protein Length: 796

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGGGTCCCAACCTCTTTGGTAAAGCAAATTTGCGCAAGGAAATGAACGCAGGCCTTCCAAATGCTTTACGCGTACGGGAACTGATAGATGGCAATGGTCAATAACGCTGTGACACGACGAAGGGGAAATTGCCAGGAAACTTGATGCTTGCTGTGACGAAATTGAAAGGAAAATTGGCCCGAAACTTCATGCTTCCAAATTCCACAGTTCAGATTACACTATAACTTCAATATATATCGCCACTTGGTTTGCTCAATGGGTGAGAAGCTCAGTAATCAACCACATTCCAAAGCTGaTTTGTTTTCAATCTTGTGCCCAACCATTGGGGTGTTGATACACAGGCAATAATAGCAAAGGTGCAGCTGGTAAgTTCCTTGCCCTCCTGAATCTTTCAGACGCAAATATTGAGGCTCAGCGCACTTTCTtTTATTCTGTATCCA_-_ATGGCAAACGTTAACTTTACCCCCGCCCGTGACGGAACATCCTCCGCATCCACCTCCCAGGGCAATACCAACAGCTATGTGTATCAAGTGTTTCTGAATCACCGCGGTCCTGATGTGAAGGAAGGACTCGCTACCGATATCTACCATCGCCTTAAAGATCTCGGATTATCAGTTTTTCTGGACCAGGAAGAACTGCAAAGAGGAGAGGAGTTGGATGCCCAAATCGAAGGGGCTATTCGAACCGCCTCTGTTCATGTAGCGATATTCTCTCCAAATTATGCTCAATCTAAATGGTGTCTCAATGAACTGGTATTGATGAGGGAACAGATGTTGAAGTCGGGGTCAACAATAATTCCGGTTTTCTACAAAGTCGAGCCCGCAGAAGTTCGGTGGGCGAGCGGCGAATATGGTCGACATCTTGGCAAGCTCGAACCACGACACAGCCACGAGACCATAAAAAAATGGATGGATACTCTTTTTGCTGTGGCGAATATAGTCGGTTTTGAGTTGAAGGACAAGGAAGAGTCGCAGCTCGTCCAGGAGGTCGTCCAACAGGTTGTGGAAAAGGCTCGCAAACCGCCTCTCGACGTCGCCAAATATCCTACTGGCCTCGATGAAAAAATTAAAGATGTGGACAGAACATTGTCACTGCAGCGGCAAAGCGAGAAGGCTACAATTTTGGGAATTGTAGGTTTTGGCGGGGTTGGGAAAACTACCCTGGCTACACAATTCTTCAACCGAGAGAGATCAAATTACAGTCGATCTTGCTTCTTATTTGATGTCAGATCTGAATATTTACCTTCCCTGCAGAGTAGCCTTCTTAAGGAGCTGATTAAATTCGATGCACAAATAAATAGCGTCGCTGAAGGCACAGGGATGCTCAAAGAGAGGCTCAAAAGAGATTCTCAACGGTCTCTTATCATTTTAGATGATATCGATCATATTGATCATCTGGATGCATTATGTGCACCCGTTATAGATACTATTCATGTAGGTAGCTTAATTTTAATTACATCTCGTAATAAGGATGTGCTTAGAAACTTCGGTATTGATGAGTCATCCATTTACACACTGGAACGCATCAAGCCAGAGCAATCGCAAGAGCTCTTTTGCTGGCATGCCTTCGGTCAACCCCGTCCTGTTGTAGGATTTGAAGAAGTTGTTGAGAAATTTTTGAATGTCTGCGATGGTTTGCCCCTGTCGCTTAGAGTGGTTGGGGCGCTTCTTCGTGGAGAAGATAAATTGAAGAATTGGAATGCGCAATTGCGCAAAACCTCCGGAGTACTTCCGGAACATATAGGGAGCACACTTAGAATTAGCTATAATGCTCTAGATGAAAAGGAAAAGCAAATATTTTTAGATATCGCCTGTTTCTTTATAGGGAAAGACAGGGATTCCGCTATAAGGGTAATGGGATGGATCCAAxxxxxxGAAGGATTGCTGGGTCTTGAGAAGCTGGAAAACAGATGCCTCGTGGAGGTGGACGGTAAAAACTGTCTCAGAATGCACGACCACCTTCGAGACCTAGGCAGAGATATAGCTGAAGGTCAAGAACATCCCCGTTGTCTTTGGCACTTCACAGAGAATATGGCTCGTCCATCATTTGTGCGTGGAGTTAGCAGGTCCAACCGAAGCATGTTGCAGCTGTCTAGGACTGAAATTGACTCTGTTCAACGAATATTCAGCAGTGAACAGTTACCGCCGCTTGTATATCTGCACTGGGAGGACTGTCCGAAGTCCTCTTTAGCTCCCTCGATTCCTTTAAAATATCTGCGCTGGAAGCACTGTCTGAAGTCCTCTTTAGCTCCCTCGATTCCATTAAATAATTTAAGTGTGTTACATATACGGGGGTACCGACTGAAAACACTCTGGCAACATGAATTTCAGGCACCTCTGCAATTGAGGGAGTTGCATATTGATGCTCCCCTTTCAAAGGTTCCAAAGTCCATTGGAAAACTGAAGCACCTTGAAAAAGTTTTTCTGAAAGCTCCTAATCTTAAAACTATTTCAAATGAATTTTGTAACTTATCGGGACTCCAAAGTCTTCTGTTGGAGTGCGAGCAGCTGCAGACGCTACCAAAGTCGATTGGGAACCTGTCGGGCCTCCAAAGTCTTCACTTGGAACGGTGCTGGAGTCTGCAGACACTCCCAGACTCAGTGGGGAACCTGTCGGGCCTCCAAAGTCTTAAGTTGTACTGGTGCTCTAGTCTGCAGACACTCCCAGACTCAGTGGGGAACCTGTCGGGCCTCCAAAGTCTTCACTTGGAATGGGAATGGTGCTCCAGTATGCAGACACTCCCAGACTCAGTGGGGAACCTGTCGGGCCTCCAAAGTCCACTGAACCTGTCGGGCCTCAAAGTCTTTGGTCGGAGGGGTGGCGATTGAAACGGAAGAAGGGCTTGCCCCGGTGCGCTTGAAATTAAGATTGTTTTCAAATATTTCATTTGTTAATGTTAAGATGGTTCATTTTATGAAATATTTGTTAATGTTAAGATGGTTGATTTT

Fln Alignment:

Contig16720___ASTSQGNTNSYVYQVFLNHRGPDVKEGLATDIYHRLKDLGLSVFLDQEELQRGEELDAQIEGAIRTASVHVAIFSPNYAQSKWCLNELVLMREQMLKSGSTIIPVFYKVEPAEVRWA------------------------SGEYGRHLGKLE-------------PRHSHETIKKWMDTLFAVANIVGFELK----DKXXXXXXXXXXXXXXEKARKPPLDVAKYPTGLDEKIKDVDRTLSLQRQSEKATILGIVGFGGVGKTTLATQFFNRERSNYSRSCFLFDVRSEYLPSLQSSLLKELIKFDAQINSVAEGTGMLKERLKRDSQRSXXXXXXXXXXXXXDALCAPVIDTIHVGSLILITSRNKDVLRNFGIDESSIYTLERIKPEQSQELFCWHAFGQPRPVVGFEEVVEKFLNVCDGLPLSLRVVGALLRGEDKLKNWNAQLRKTSGVLPEHIGSTLRISYNALDEKEKQIFLDIACFFIGKDRDSAIRxxxxxxxEKLENRCLVEVDGKNCLRMHDHLRDLGRDIAEGQEHPRCLWHFTE----NMARPSFVRGVSRSNR---------SMLQLSRTEIDSVQRIFSSEQLPPLVYLHWEDCPKSSLAPSIPLKYLRWKHCLKSSLAPSIPLNNLSVLHIRGYRLKTLWQHEFQAPLQLRELHIDAPLSKVPKSIGKLKHLEKVFLKAPNLKTISNEFCNXXXXXXXXXXXXXXXXL-PKSIGNLSGLQSLHLERCWSLQTLPDSVGNLSGLQSLKLYWCSSLQTLPDSVGNLSGLQSLHLEWEWCSSMQTLPDSVGNLSGLQS
C0PQE2_______________ASSSTSPSHDDVYNVFINHRGPDVKNGLASHIYRRLIDHGLKVFLDKPEMQEGEPITPQIKRAIRTASVHIAIFSKGYADSTWCLDELLDMLDTV-KSGSAILPVFYNVQPSDLRWTRGGDTVYARVLSIFLCILLCTRGENGVYARALRKLQKKTTLDSVTNKKKPRHDSDTIEKWRKALSDVSLISGFELNACNGDERQLVDKVVQRVLEKVPKVHPPLNVAKYPSGLDEKIQDVDRILSLQQQRKKARVVGIVGLGGIGKTTLAKKIYNREKSNYKRICLLRDVRSSNLHSLQSRLLKELNQSSAQINDIDEGI----EKLKTYSERALIVLDDVDDISQLDALFASLKDTIHVDSLILVTSRNKDVLTSSGITESSIYRLKGLNRKHSQELFCFHAFGQPHPVVGFEEVVEKFLDVCDGLPLSLKVLGALLHGKD-LWYWKEQLGKTSTILPRKVRSTLEISFDALDKQEKEVFLDIACFFIGENRDTIRIxxxxxxxENLKNRCLVEVDSENCLRMHDHLRDLGRDLAENSEYPRRIWRMTDSLLHNVSDQSPVRGISMVHRNGSERSCNLSNCKLLKAESHFVEQVLSNGQLLPLIYLRWENYP-------------------KSSLPPSLPSMNLRVLHIQGKQLKTLWQHESQAPLQLRELYVNAPLSKVPESIGTLKYLEKIVLYNGSMTLLPDSVGHLTGLQTLDLIGCSTLQMLPDSVGNLTGLQKLDLSWCSTLQMLPDSVGNLTGLQTLALGWCSTLQTLPDSVGNLTGLQTLDL--IECSTLQTLPDSVGNLTGLQT

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
34	66		33		0.997452
176			14	85	0.993533
219			20	80	0.995493
2325	33	66			0.997452
2399		85	14		0.993533
2405	14	85			0.993533
2408		14	85		0.993533
2409	14		85		0.993533
2410	14			85	0.993533
2412	85		14		0.993533
2415		71		28	1.0
2419	85	14			0.993533
2420	71	14	14		0.984337
2421	16	83			0.994512
2450	14	85			0.993533
2451		85		14	0.993533
2525		50	50		1.0
2566	16	83			0.994512
2567	83		16		0.994512
2581		50	50		1.0
2641	57		42		1.0
2650	85			14	0.993533
2651		85	14		0.993533
2653	85		14		0.993533
2654	85			14	0.993533
2655	57		42		1.0
2660		16		83	0.994512
2661	16	16		66	0.988813
2662	16			83	0.994512
2664		16	83		0.994512
2665	66	16		16	0.988813
2668		16		83	0.994512
2670	20			80	0.995493
2671		20	80		0.995493
2691	50	50			1.0
2692		50		50	1.0
2693		50		50	1.0
2696	50	50			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain