SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16691

Length: 1415 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene16691 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	agmatine deiminase [Arabidopsis thaliana] sp\|Q8GWW7.2\|AGUA_ARATH RecName: Full=Agmatine deiminase; AltName: Full=Agmatine iminohydrolase; AltName: Full=Protein EMBRYO DEFECTIVE 1873 emb\|CAB93718.1\| putative protein [Arabidopsis thaliana] gb\|AED91261.1\| ag	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	agmatine deiminase	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Agmatine deiminase.	EC:3.5.3.12	-	0.0	82%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Arginine and proline metabolism	00330		0.0	82%
Blast2go	Metabolic pathways	01100		0.0	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	polyamine biosynthetic process	GO:0006596	Biological Process	0.0	82%
Blast2go	agmatine deiminase activity	GO:0047632	Molecular Function	0.0	82%

Source	InterPros	Term	Type	Identity
Sma3	Agmatine deiminase	IPR017754	-	-
Sma3	Peptidyl-arginine deiminase, Porphyromonas-type	IPR007466	-	-
Sma3	TonB box, conserved site	IPR010916	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LL48

Fln msg:

Fln protein: MDNNASPSEFGYHMPAEWELHSQCWMGWPERPDNWRENGLHGQRVFAEVASAISKFENVTVCASVAQWDSARAQLPKNIRVLEMSMNDAWFRDIGPTFVVCARTSSVAGIDWNFNSWGGAEDGCYKDWSLDNLVARKIIEVERLTRFPHSMVLEGGSIHVDGEGTCITTEECLLNPNRNPHLTREAIEHQLKQYLGVTKIIWLPWGLYGDDDTNGHIDNMCCFVRPGVVMLAWTNDEDDPQYERSLEAYSVLSKATDAQGRTLQILKMHVPDPLYMTEEEADGLQALDGKPRIAGTRLAASYINFYIANKGIVAPAFGDEKRDKEAFDVLSATFPDHEVVMVAGAREIVLGGGNIHCITQQQPACLP*

Protein Length: 369

Fln nts: AGGCACACTGACATCTGGAACATCCCGAAATGTGACAGTGGCATTTCAATTATTTGTCGTGACGTTGGCTGTGACTGAATCGTTTGTAGCTACAGTGTTGGTGAGTACATGTGATGGTTACGGGTTGGCAAATAATTGCGACTTACGGGTGTTTACTGCTTTGAATAAAGCTTAAGAGGACACAATTTGATTGCTGCGGCTGGATTTTGTTGTTCTGACTCAGATATTTCTCAACGACCTCTCCGCTGAGGAGTTGCTGCAGGACTGGAGCTGCACAAACGTAGCTAAATT_-_ATGGACAATAATGCTAGTCCAAGTGAGTTTGGATACCACATGCCTGCTGAATGGGAGTTACATTCACAGTGTTGGATGGGTTGGCCTGAACGTCCTGATAATTGGCGTGAAAATGGCTTGCATGGTCAACGTGTCTTTGCTGAGGTGGCTTCTGCTATCTCAAAGTTTGAGAATGTTACAGTCTGTGCTAGTGTGGCGCAGTGGGATAGTGCACGGGCTCAGCTACCAAAAAACATTAGGGTATTGGAGATGAGCATGAATGATGCTTGGTTTAGGGACATAGGACCAACATTCGTCGTGTGTGCTAGGACTTCAAGTGTTGCGGGTATTGATTGGAACTTCAATAGTTGGGGTGGGGCTGAAGATGGCTGCTATAAGGATTGGAGCCTTGATAACCTTGTTGCTAGAAAGATCATTGAAGTTGAGAGGCTTACAAGGTTTCCACATTCCATGGTCTTGGAAGGGGGTAGTATTCATGTCGATGGAGAAGGAACTTGCATCACGACAGAAGAGTGTTTGCTTAATCCAAATCGCAACCCTCACCTTACAAGAGAGGCAATTGAGCATCAATTGAAGCAATACCTTGGGGTTACCAAAATCATTTGGCTTCCATGGGGTTTGTACGGAGATGATGATACCAATGGACACATAGATAACATGTGCTGCTTCGTAAGGCCGGGGGTGGTTATGCTGGCATGGACTAATGATGAAGATGATCCACAATATGAACGCTCACTTGAGGCTTATTCTGTTCTTTCCAAGGCTACTGATGCGCAGGGACGAACATTACAGATCCTCAAGATGCATGTACCAGATCCTCTCTACATGACAGAGGAAGAGGCAGATGGGCTTCAAGCTTTGGATGGAAAACCCAGGATTGCTGGAACCAGGCTTGCAGCCTCATATATAAACTTTTACATTGCAAACAAAGGAATTGTGGCTCCTGCATTTGGAGATGAAAAGAGAGATAAAGAAGCTTTTGATGTCCTCTCTGCAACATTTCCTGATCATGAAGTTGTAATGGTAGCTGGTGCGAGAGAAATTGTGCTTGGTGGAGGTAATATACACTGCATAACGCAGCAACAACCGGCTTGCTTGCCTTGA___TGTATTGACAAATGGAAAAG

Fln Alignment:

Contig16691___MDNNASPSEFGYHMPAEWELHSQCWMGWPERPDNWRENGLHGQRVFAEVASAISKFENVTVCASVAQWDSARAQLPKNIRVLEMSMNDAWFRDIGPTFVVCARTSSVAGIDWNFNSWGGAEDGCYKDWSLDNLVARKIIEVERLTRFPHSMVLEGGSIHVDGEGTCITTEECLLNPNRNPHLTREAIEHQLKQYLGVTKIIWLPWGLYGDDDTNGHIDNMCCFVRPGVVMLAWTNDEDDPQYERSLEAYSVLSKATDAQGRTLQILKMHVPDPLYMTEEEADGLQALDGKPRIAGTRLAASYINFYIANKGIVAPAFGDEKRDKEAFDVLSATFPDHEVVMVAGAREIVLGGGNIHCITQQQPACL
B8LL48_______________MDNNASPSEFGYRMPAEWEFHSQCWMGWPERPDNWRESAMHGQRVFVEVASAISKFESVTVCASAAQWDSARAQLPKNIRVLEMSMNDAWFRDIGPTFVVCDRTSSVAGIDWSFNSWGGAENGCYKDWSLDSLVARKIIEVERLTRFPHSMVLEGGSIHVDGEGTCITTEECLLNPNRNPHLTREAIEHQLKHYLGVTTIIWLPWGLYGDDDTNGHIDNMCCFVRPGVVMLAWTDDENDPQYERSLEAYSVLSKAIDAHGRTLQIIKIHVPEPLFMTEEEADGLQALDGKPRNAGTRLAASYINFYIANKGIVAPAFGDEKRDKEAVDVLTAAFPDHEVITVSGAREIVLGGGNIHCITQQQPACL

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
1057	8			88	0.999262
1059		8		92	0.999718
1060		8	92		0.999718
1063		4	8	88	0.999262
1066	92	8			0.999718
1069			13	86	1.0
1070	8	82			0.999136
1072	4	86	8		0.999539
1135		80		20	1.0
1215	83	12		4	1.0
1216		14	85		1.0
1218	14	80	4		1.0
1219	5		85	10	0.999793
1252		11		88	0.999952
1326	58		41		1.0
1334	20	80			0.995493
1335		20	80		0.995493
1339		60	40		1.0
1343		60	40		1.0
1346	50		50		1.0
1352	50			50	1.0
1353		50	50		1.0
1357		50		50	1.0
1359		50	50		1.0
1361	50			50	1.0
1363	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain