SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16683

Length: 973 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene16683 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cytoplasmic ribosomal protein S14 [Brassica napus]	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	40s ribosomal protein s14	-	-	96%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S11	IPR001971	-	0.0	-
Sma3	Ribosomal S11, conserved site	IPR018102	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
437		92		7	0.999602
438	92		7		0.999602
445	6			93	0.999453
450			6	93	0.999364
454	6		3	90	0.997952
456		3	6	90	0.997952
716		4		95	0.995482
717		4	95		0.995482
720	95			4	0.995482
756		12		87	1.0
759		0		96	1.0
783	4	0	94		1.0
784	10	89			1.0
787	25	75			1.0
789	24	11	63		1.0
790	87	11	1		1.0
791	88	10		1	1.0
792	91	4		3	0.999998
793	11	5	68	8	1.0
794	66	20	8	3	1.0
795	63	26	3	1	1.0
796	3	75	3	7	1.0
797	37	50	12		1.0
798	37	50		12	1.0
800	25		12	62	1.0
802	75			25	0.996473
804	75	25			0.996473
806	75			25	0.996473
807			75	25	0.996473
809	25			75	0.996473
811	25	75			0.996473
812		25		75	0.996473
817		66	33		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
758	769	TC TC TC TC TC TC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain