SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16632

Length: 767 nt

Origin of reads: Inia v1 Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene16632

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to LTA2 (PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE); dihydrolipoyllysine-residue acetyltransferase n=1 Tax=Vitis vinifera RepID=UPI00019828C8	-	-	7.0e-24	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Blast2go	protein	-	-	1.6588e-28	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Dihydrolipoyllysine-residue acetyltransferase.	EC:2.3.1.12	-	1.6588e-28	81%

Source	KEGGs	Term	e value	Identity
Blast2go	Glycolysis / Gluconeogenesis	00010	1.6588e-28	81%
Blast2go	Citrate cycle (TCA cycle)	00020	1.6588e-28	81%
Blast2go	Pyruvate metabolism	00620	1.6588e-28	81%
Blast2go	Biosynthesis of phenylpropanoids	01061	1.6588e-28	81%
Blast2go	Biosynthesis of terpenoids and steroids	01062	1.6588e-28	81%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	1.6588e-28	81%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	1.6588e-28	81%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	1.6588e-28	81%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	1.6588e-28	81%
Blast2go	Biosynthesis of plant hormones	01070	1.6588e-28	81%
Blast2go	Metabolic pathways	01100	1.6588e-28	81%
Blast2go	Biosynthesis of secondary metabolites	01110	1.6588e-28	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	dihydrolipoyllysine-residue acetyltransferase activity	GO:0004742	Molecular Function	1.6588e-28	81%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	1.6588e-28	81%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	1.6588e-28	81%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	1.6588e-28	81%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.6588e-28	81%

Source	InterPros	Term	Type	Identity
Sma3	Biotin/lipoyl attachment	IPR000089	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	2-oxoacid dehydrogenase acyltransferase, catalytic domain	IPR001078	-	-
Sma3	Ribosomal protein S10	IPR001848	-	-
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	E3 binding	IPR004167	-	-
Sma3	Ribosomal protein S10, eukaryotic/archaeal	IPR005729	-	-
Sma3	Ribosomal protein S10, conserved site	IPR018268	-	-

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
647	85	14			0.993533
652	14		85		0.993533
653		14	85		0.993533
655			85	14	0.993533
656			85	14	0.993533
659		16	83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain