SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16522

Length: 2028 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene16522
TAACTTGGGGTGCTCGCCCTCCAACAAATCAGTGGCCTGCCCATCGCCGAATGGTCACGTAGGAGCAGCAGCTCCAACGAATTCCTCCTCCACTTTGGGCGGCCACTTGGCGCGGAGGCTCGTTGAAATTGGCGTCACGGACGTTTTCTCTGTTCCTGGGGACTTCAATCTCACCTTGCTGGACCATCTGCTGGCGGAGCCTGGCCTCAGTCTCATCGGCTGCTGCAACGAGCTGAACGCTGGCTACGCTGCTGATGGGTACGCACGATCCAGAGGCGTGGGGGCCTGCGTTGTTACATTCACAGTAGGGGGGCTTAGCGTCATCAATGCGATCGCGGGGGCTTACAGTGAGAATCTGCCCGTCATCTGTATCGTTGGAGGGCCTAATTCTAATGACTATGGGACCAACCGCATTCTGCATCATACCATTGGGTTGCCCGACTTCAGCCAGGAGTATCGCTGCTTCCAGACGGTCACATGCGCTCAGGTTATTGTGAATCACTTGGATGATGCCCAGGAACTTATTGACTATGCGATTTCCACAGCACTTATCGAGAGCAAGCCTGTGTATATCAGCATCAGCTGTAATCTTGCTGGCGTTCAACACCCCACTTTCAGTCGGCAGCCTGTTCCATATTGCCTATCACCCAGGCTAAGCAATCCCCAAAGCTTGGAAGCTGCGGTGGAAATTACAGCAGAATTCCTAAATGCAGCAGTGAAGCCAGTGTTGGTAGGTGGGCCAAAGATGAGAGTTGCTAAGGCAAAAAGTGCGTTTGTGGAATTAGCGAACGCATCGGGTTATCCCGTGGCTGTAATGCCGGCTGCTAAGGGACAGGTTCCAGAGACCCATCCTCATTTCATAGGCACTTACTGGGGTGCAGTAAGTACTGCATTCTGTGCTGAAATAGTTGAGTCCGCAGATGCATATTTATTTGCAGGGCCGATTTTTAATGACTATAGTTCAGTGGGATATTCATTGCTATTGAAAAAGGAGAAAGCTATAATTGTGCAGCCTAACAGGGTGACTGTGGCAAATGGGCCTACTTTTGGGTGTGTGTTGATGAAAGATTTCTTAGAAGCCCTTGCAAAGAAGGTGAAGCGCAACCCAACATGTTTGGAAAATTATCGGCGTATTTTTGTTCCTGACGGTGTTCCCTTGAAAAGTGCACCAAATGAGCCCTTGAGGGTCAATGTGTTATTCAAACACATTCAGGGCATGCTCACAGATGACACTGCTGTAATTGCTGAAACTGGTGACTCTTGGTTCAATTGTCAGAAGCTTAAATTGCCAGAAAAGTGTGGGTATGAGTTTCAAATGCAGTATGGATCGATTGGCTGGTCTGTAGGAGCAACACTGGGATATGCTCAAGCTACGCCAGAGAAGCGTTTAATTTCATGCATTGGTGATGGAAGCTTTCAGGTGACAGTCCAGGATGTTTCTACTATGATTCGAAATGGGCAGAATCCTATCATTTTTCTGATTAATAATGGAGGATATACTATAGAGGTTGAAATTCATGATGGCCCATACAATGTCATAAAGAATTGGAACTACACCGGTTTAGTAGATGCCCTTCATAACGGTGAAGGGAAATGCTGGACTGCGAAGGTTAAGACGGAAGAAGAGGTTGTAGAGGCTATTAAAACTTCTCTAGGGCCCAAAAAGGATTGCTTATGTTTCATTGAAGTCATTGTACACAAAGATGATACCAGCAAAGAGTTGCTTGAGTGGGGGTCCAGGGTTTCGTCAGCAAACAGCAGGCCACCAAATCCTCAGTAGTGGGGCTTTAACAAGAAGAGCAATTAGAAACACTTTCCGCATCTCATGTTTCAGATGTCATTGTTTTTGTGGTCATCCTCTAGGATCATATGTTATAATCATCCTATATATCTGAATCTTGATCAAAGGTTGAGCTGTGGCCCTCCATTTAGGCACACAGGATACTGCTACTTTTGTGCTTGGTTAGCATGTTTAGTGTCATACTTTGCAAGAGCAGTTGGAGCCATTTTTGCAATATGAATAACATT

Ace file of the UniGene sp_v2.0_unigene16522 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pyruvate decarboxylase 1 n=1 Tax=Lotus corniculatus RepID=Q84V95_LOTCO	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	pyruvate decarboxylase	-	-	88%

Source	InterPros	Term	Type	Identity
Sma3	TPP-binding enzyme, conserved site	IPR000399	-	-
Sma3	SET domain	IPR001214	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	SRA-YDG	IPR003105	-	-
Sma3	Pre-SET domain	IPR007728	-	-
Sma3	Thiamine pyrophosphate enzyme, C-terminal TPP-binding	IPR011766	-	-
Sma3	Thiamine pyrophosphate enzyme, central domain	IPR012000	-	-
Sma3	Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain	IPR012001	-	-
Sma3	Pyruvate decarboxylase/indolepyruvate decarboxylase	IPR012110	-	-
Sma3	Gonadotropin, beta subunit, conserved site	IPR018245	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PRN0

Fln msg: W2: There is no M at the beginning, your sequence is longer than subject: 593 - 409

Fln protein: NLGCSPSNKSVACPSPNGHVGAAAPTNSSSTLGGHLARRLVEIGVTDVFSVPGDFNLTLLDHLLAEPGLSLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVINAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQEYRCFQTVTCAQVIVNHLDDAQELIDYAISTALIESKPVYISISCNLAGVQHPTFSRQPVPYCLSPRLSNPQSLEAAVEITAEFLNAAVKPVLVGGPKMRVAKAKSAFVELANASGYPVAVMPAAKGQVPETHPHFIGTYWGAVSTAFCAEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAIIVQPNRVTVANGPTFGCVLMKDFLEALAKKVKRNPTCLENYRRIFVPDGVPLKSAPNEPLRVNVLFKHIQGMLTDDTAVIAETGDSWFNCQKLKLPEKCGYEFQMQYGSIGWSVGATLGYAQATPEKRLISCIGDGSFQVTVQDVSTMIRNGQNPIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDALHNGEGKCWTAKVKTEEEVVEAIKTSLGPKKDCLCFIEVIVHKDDTSKELLEWGSRVSSANSRPPNPQ*

Protein Length: 594

Fln nts: TAACTTGGGGTGCTCGCCCTCCAACAAATCAGTGGCCTGCCCATCGCCGAATGGTCACGTAGGAGCAGCAGCTCCAACGAATTCCTCCTCCACTTTGGGCGGCCACTTGGCGCGGAGGCTCGTTGAAATTGGCGTCACGGACGTTTTCTCTGTTCCTGGGGACTTCAATCTCACCTTGCTGGACCATCTGCTGGCGGAGCCTGGCCTCAGTCTCATCGGCTGCTGCAACGAGCTGAACGCTGGCTACGCTGCTGATGGGTACGCACGATCCAGAGGCGTGGGGGCCTGCGTTGTTACATTCACAGTAGGGGGGCTTAGCGTCATCAATGCGATCGCGGGGGCTTACAGTGAGAATCTGCCCGTCATCTGTATCGTTGGAGGGCCTAATTCTAATGACTATGGGACCAACCGCATTCTGCATCATACCATTGGGTTGCCCGACTTCAGCCAGGAGTATCGCTGCTTCCAGACGGTCACATGCGCTCAGGTTATTGTGAATCACTTGGATGATGCCCAGGAACTTATTGACTATGCGATTTCCACAGCACTTATCGAGAGCAAGCCTGTGTATATCAGCATCAGCTGTAATCTTGCTGGCGTTCAACACCCCACTTTCAGTCGGCAGCCTGTTCCATATTGCCTATCACCCAGGCTAAGCAATCCCCAAAGCTTGGAAGCTGCGGTGGAAATTACAGCAGAATTCCTAAATGCAGCAGTGAAGCCAGTGTTGGTAGGTGGGCCAAAGATGAGAGTTGCTAAGGCAAAAAGTGCGTTTGTGGAATTAGCGAACGCATCGGGTTATCCCGTGGCTGTAATGCCGGCTGCTAAGGGACAGGTTCCAGAGACCCATCCTCATTTCATAGGCACTTACTGGGGTGCAGTAAGTACTGCATTCTGTGCTGAAATAGTTGAGTCCGCAGATGCATATTTATTTGCAGGGCCGATTTTTAATGACTATAGTTCAGTGGGATATTCATTGCTATTGAAAAAGGAGAAAGCTATAATTGTGCAGCCTAACAGGGTGACTGTGGCAAATGGGCCTACTTTTGGGTGTGTGTTGATGAAAGATTTCTTAGAAGCCCTTGCAAAGAAGGTGAAGCGCAACCCAACATGTTTGGAAAATTATCGGCGTATTTTTGTTCCTGACGGTGTTCCCTTGAAAAGTGCACCAAATGAGCCCTTGAGGGTCAATGTGTTATTCAAACACATTCAGGGCATGCTCACAGATGACACTGCTGTAATTGCTGAAACTGGTGACTCTTGGTTCAATTGTCAGAAGCTTAAATTGCCAGAAAAGTGTGGGTATGAGTTTCAAATGCAGTATGGATCGATTGGCTGGTCTGTAGGAGCAACACTGGGATATGCTCAAGCTACGCCAGAGAAGCGTTTAATTTCATGCATTGGTGATGGAAGCTTTCAGGTGACAGTCCAGGATGTTTCTACTATGATTCGAAATGGGCAGAATCCTATCATTTTTCTGATTAATAATGGAGGATATACTATAGAGGTTGAAATTCATGATGGCCCATACAATGTCATAAAGAATTGGAACTACACCGGTTTAGTAGATGCCCTTCATAACGGTGAAGGGAAATGCTGGACTGCGAAGGTTAAGACGGAAGAAGAGGTTGTAGAGGCTATTAAAACTTCTCTAGGGCCCAAAAAGGATTGCTTATGTTTCATTGAAGTCATTGTACACAAAGATGATACCAGCAAAGAGTTGCTTGAGTGGGGGTCCAGGGTTTCGTCAGCAAACAGCAGGCCACCAAATCCTCAGTAG___TGGGGCTTTAACAAGAAGAGCAATTAGAAACACTTTCCGCATCTCATGTTTCAGATGTCATTGTTTTTGTGGTCATCCTCTAGGATCATATGTTATAATCATCCTATATATCTGAATCTTGATCAAAGGTTGAGCTGTGGCCCTCCATTTAGGCACACAGGATACTGCTACTTTTGTGCTTGGTTAGCATGTTTAGTGTCATACTTTGCAAGAGCAGTTGGAGCCATTTTTGCAATATGAATAACATT

Fln Alignment:

Contig16522___IESKPVYISISCNLAGVQHPTFSRQPVPYCLSPRLSNPQSLEAAVEITAEFLNAAVKPVLVGGPKMRVAKAKSAFVELANASGYPVAVMPAAKGQVPETHPHFIGTYWGAVSTAFCAEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAIIVQPNRVTVANGPTFGCVLMKDFLEALAKKVKRNPTCLENYRRIFVPDGVPLKSAPNEPLRVNVLFKHIQGMLTDDTAVIAETGDSWFNCQKLKLPEKCGYEFQMQYGSIGWSVGATLGYAQATPEKRLISCIGDGSFQVTVQDVSTMIRNGQNPIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDALHNGEGKCWXXXXXXXXXXXXXXXTSLGPKKDCLCFIEVIVHKDDTSKELLEWGSRVSSANSRPPNPQ
C0PRN0_______________MESKPVYISISCNLAAVQHPTFSRQPVPYSLSPRLSNPKSLEAAVDMTAEFLNAAVKPVMVGGPKMRVAKAKNAFVELADASGYPVAVMPSAKGQVPEIHPHFIGTYWGAISTSFCAEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAVIVQPNRVTIGNGPTFGCVLMKDFLEALAKKVKHNPTSLENYRRIFVPEGVPLKSAPNEPLRVNVLFKHIQGMLTNETAVIAETGDSWFNCQKLKLPEKCGYEFQMQYGSIGWSVGATLGYAQAAPDKRVIACIGDGSFQVTVQDVSTMIRNGQNTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDALHNGEGKCWTVKVKTEEEVVEAIKTSLGPKKDCLCFIEVIVHKDDTSKELLEWGSRVSAANGRPPNPQ

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
660	85			14	0.993533
667	14		85		0.993533
668		85	14		0.993533
670		14		85	0.993533
699	83			16	0.994512
702		16		83	0.994512
720	83		16		0.994512
735		66	33		1.0
759	20		80		0.995493
780	80		20		0.995493
789	80	20			0.995493
801			20	80	0.995493
806		20		80	0.995493
810			80	20	0.995493
822	75		25		0.996473
836	25		75		0.996473
849		75		25	0.996473
855		75		25	0.996473
887			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain