SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16479

Length: 1271 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene16479 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pro-resilin n=3 Tax=Andropogoneae RepID=B6T4Q5_MAIZE	-	-	1.0e-24	31%
FL-Next	tr=Putative uncharacterized protein; Pinus halepensis (Aleppo pine).	-	-	0.0	91%
Blast2go	protein	-	-	0.0	49%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q5Y2E6

Fln msg: your sequence is shorter than subject: 307 - 323

Fln protein: MAGYARDSVDDFDDYDPTPFGGGYDQGVTYGKSRPPSEETCYPPSQAGDESSHDFSYGSESCPYGGAGGAHDIDEQRPTYGSGSTPSYEAEESTYGGGGGGFDYGRPKPQSQPAYGYGHEPKPQPAYGSKPNPYGDQYEEKPSWDIPHQDYQSGYSDDKYGDEVKPSFGRRPSYGQQEEEIDPPRFGRPPSNYEQQEEEPPRFERPPSYYQQEEEPPKFVRPSSYYQEEEPPKFQKPSSYYQEEEPPKFERPPSYYQQEEEPAKSERPSYYQPDQEEGGYQRPQYGNDYKEPKHGHHHHHRKYSDE*

Protein Length: 308

Fln nts: TCGTGACCTTGGCTGTCACTCAATAAGTTGTTGCGAGAACAGGTGTGGAGATTTCAATTGAGGCAGCCTTGCGGGAAGTTCAAGAATTGGGAGAAACAAACTAAGCTCGGAGTA_-_ATGGCTGGATATGCTCGTGATTCAGTTGACGACTTTGATGACTACGATCCTACTCCCTTTGGCGGTGGATATGATCAGGGAGTCACCTATGGTAAATCCAGGCCTCCCTCTGAAGAAACTTGTTATCCTCCCAGTCAAGCAGGGGACGAGTCGTCCCATGACTTTTCATATGGATCGGAGTCATGCCCTTACGGAGGAGCAGGAGGAGCCCATGATATAGATGAACAGAGACCCACATATGGATCCGGATCCACCCCTTCCTATGAGGCAGAGGAATCCACTTATGGTGGTGGTGGTGGAGGATTTGATTATGGGAGGCCCAAGCCTCAGTCTCAGCCTGCATATGGGTATGGGCATGAGCCCAAGCCTCAGCCTGCATACGGGTCGAAGCCCAATCCATATGGAGATCAGTATGAGGAAAAGCCTAGCTGGGACATTCCACACCAGGATTACCAGTCTGGGTATTCTGACGATAAATACGGAGACGAGGTTAAGCCGAGTTTTGGAAGGAGGCCTAGCTATGGTCAGCAGGAGGAGGAAATAGATCCACCTAGGTTTGGGAGACCCCCCAGTAATTATGAACAGCAGGAGGAGGAGCCTCCCAGGTTCGAGAGACCCCCAAGTTACTATCAGCAGGAGGAGGAGCCTCCCAAGTTCGTGAGACCCTCCAGTTACTATCAGGAGGAGGAGCCTCCCAAGTTCCAGAAACCCTCCAGTTACTATCAGGAGGAGGAGCCACCCAAGTTCGAGAGACCCCCCAGTTACTATCAGCAGGAGGAGGAGCCTGCCAAGTCTGAGAGGCCCAGTTATTACCAACCTGACCAGGAAGAAGGAGGATATCAGCGCCCTCAATATGGAAATGACTATAAGGAACCCAAGCATGGACATCACCATCACCACCGCAAATATTCTGATGAATGA___TGTGAATAGCTAATGTTTTACTCACGAGTAAAACTTAACCATGGGGCATTGTCGTGCATACTCCAATAAGATTTCCTTTTAGCGCGGGAAATCCACTGCAATATTATAAATGCTATTTTTATAATATGTTGCTGATAAACTGGATGACTTAGGTATAAATTTCAATGGATATACTTACTACATATCACTTTAATGTTTAATATATAGCTAATAAAGTATTGTTTATATGTGATTTC

Fln Alignment:

Contig16479___MAGYARDSVDDFDDYDPTPFGGGYDQGVTYGKSRPPSEETCYPPSQAGDESSHDFSYGSESCPYGGAGGAHDIDEQRPTYGSGSTPSYEAEESTYXXXXXGFDYGRPKPQSQPAYGYGHEPKPQPAYGSKPNPYGDQYEEKPSWDIPHQDYQS-GYSDDKYGDEVKPSFGRRPSYGQQEEEIDPPRFGRPPSN----------------YXXXXXXXXXXXXXXXXXXXXXXXPKFVRPSSYYQEEEPPKFQKPSSYYQ-EEEPPKFERPPSYYQQEEEPAKSERPSYYQPDQEEGGYQRPQYGNDYKEPKXXXXXXHRKYSDE
Q5Y2E6_______________MAGYARDSVDDFDDYDPTPFGGGYDQGVTYGKSRPPSEETCYPPSQAGDESSHDFSYGSESCPYEG-GGAHDIDEQRPTYGSGSTPSYEAEESTYVGGGGGSDYGRPKPQSQPAYGYGHEPEPQPAYGSKPNPYGDQYEEKPSWNIPHQDYTSPGYSDDKYGDEVKPSFGRKPSYGQQEEEIDPPRFGRPPSNYEQQEEEPPRFQRPPSYHQQEEEPPRFERPPSYYQQEEEPPKFVRPSSYYQEEEPPKFQKPSSYYQEEEEPPRFERPPSYYQQEEEPAKSERPSYYQPDQEEGGYQRPQYGNDYEEPKHGHHHHHRKYSDE

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
1220			87	12	0.992554
1221	75		12		0.975346
1223	87		12		0.992554
1226			12	87	0.992554
1227	12	87			0.992554
1229	87		12		0.992554
1230		87	12		0.992554
1231	87	12			0.992554
1233	12	87			0.992554
1234	12			87	0.992554
1236			12	87	0.992554
1239	12			87	0.992554
1244	37		62		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
859	873	CCA CCA CCA CCA CCA	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain