SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16463

Length: 2449 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene16463
GTATTTTTGTATGAACCGTCGGATTCGAGATCGGACGGCGATCCGAAACTGCAAGCGTCGGCCGTCGGATGCAGCATCGGACGGCAAAGAAGGAACCCTAAAACGCATTGCAACGTGCTTGGTGGGTGGAGGTTCTATGACCAGTATACGTCGTGACCTTGGCTGTCACGGGGCTCTTCATCTTGTGCGAGTCTCTCTGCTCTCTACGCCGCTGCGAAGCTGTTCTGTGGTGCTTCTGATTCTCCAGACTCAGGCAGCCGTGTTTGTAAGAGAATTTAGTTCATCATGGGAAAGGAGAAAACCCATATCAACATTGTGGTTATTGGCCATGTCGACTCCGGCAAGTCAACAACCACTGGGCATTTGATCTACAAGCTTGGAGGAATTGACAAGCGTGTGATTGAACGTTTTGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCTTGGGTTCTTGACAAGCTCAAGGCTGAACGTGAACGTGGTATCACAATTGATATTGCACTGTGGAAGTTTGAGACAACTAAATACTACTGCACTGTGATTGATGCCCCTGGCCATCGTGATTTCATCAAGAACATGATTACTGGAACATCTCAGGCTGACTGTGCAGTTTTGATCATCGACTCCACCACTGGAGGTTTTGAAGCTGGTATTTCCAAGGACGGTCAGACGAGAGAACATGCCCTATTGGCGTTCACCTTGGGAGTGAAGCAAATGATTTGCTGCTGTAACAAGATGGATGCCACTACTCCCAAGTACTCTAAGGCTCGTTATGATGAAATTGTTAAGGAAGTATCTTCTTATTTGAAGAGGGTTGGATACAACCCGGACAAGATTCCTTTTGTGCCCATCTCTGGTTTTGAGGGTGACAATATGATTGAGCGTTCTACCAACCTTGATTGGTACAAGGGTCCAACACTCTTGGAAGCTCTGGACCAGGTTTCAGAGCCAAAGCGTCCTTCAGACAAGCCTCTGAGGTTGCCTCTTCAGGATGTTTACAAGATTGGTGGTATTGGGACTGTGCCTGTTGGTCGTGTGGAAACTGGAGTCATAAAACCAGGTACGATTGTTACCTTTGGTCCCACTGGTCTGACAACTGAAGTTAAGTCTGTTGAAATGCATCATGAAGCTCTTCAGGAGGCATTGCCTGGTGACAATGTGGGATTCAATGTTAAGAATGTTGCTGTTAAGGATCTCAAGCGTGGTTATGTGGCATCTGATTCCAAGAATGATCCAGCAAAGGAAGCTGCCAACTTTACCGCACAGGTTATTATTATGAATCATCCAGGACAGATTGGAAATGGTTATGCCCCTGTGTTGGATTGTCACACTTGCCACATTGCCGTCAAGTTTGCTGAGATCATGACCAAGGTTGACAGGCGTTCTGGCAAGGAGCTGGAGAAGGAGCCCAAGTTTCTTAAGAATGGAGATGCTGGATTTGTTAAGATGATTCCAACCAAACCCATGGTTGTCGAAACTTTTGCAGAGTATCCTCCATTGGGTCGTTTTGCAGTCAGGGACATGCGTCAGACGGTTGCTGTAGGAGTCATCAAAGCTGTTGAAAAGAAGGAACCTAGTGGTGCAAAGGTTACCAAGGCAGCAGCCAAAAAGAAGTGAATGTTCCAGCAAAGTGATTGGGAATGGAGGATTGCGTGCTGCATTTCGTGTGCTTCCATGCTTATGCTTCACTATTTTCCCGATAGTATGTTAGTAGAGTTAGTTTTCCAAATGCAGAATTGGGTTCTTGATCGGCGGTGGCATAGGTTACATTATTTTCTAGTAAATACTTTTTAATGGTTACATTAGGCTAAAGTTGATTTAAGATTTCGTAGTTGCGGGGAAATCATGAGTTTGTCTGCACTGCAAGGAAATCTATGCAGTTGGATTGAGGGAGGATGGGCATTAATAATTTCTATTACTGGTTTACTGGTTTATTTTTAATGTTTGTATTGCCGTCCGTACATGACATTTTTCTCCGGATTGAGAAGACTTGGAATTTATATTAAAGCGCAGTTTTGAGGAGAAAATGTTTTTCTAATACTTTTAGATTGCTCGATGTTTTGTAGATCTATATTCTAGGCTCTGCGTTTTTACTTGCAATTGAATATCCGAAAAGTCCCTTGGTTGAGAATATGAAACTAGTCAGTCTCTACGCCAGGCACACTAGAAACCTTGGTTGTTGCTGGATGCGTGATATAGTTTGGCTTTTGGAGTTATGCTAGCTGTAAATGATTTTTTGCGGGCGCTTTGTTAATCCTCCCTCTAGTCACTGTTTTCAGGAGTGACAAGAAAATACTATTGTTTTTGTTCTACTATACGTTTGTCTTAGAAGGAGCTCCTGGTTTTGCCTGGTATAATTTAAGATGTCAGAAGTGGTTTTGATATTTGGTGTTTAGATTTGTGAAATGAAATAAGATATGCATTTATGGATTTATAG

Ace file of the UniGene sp_v2.0_unigene16463

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Elongation factor 1-alpha n=193 Tax=Eukaryota RepID=EF1A_ARATH	-	-	93%
FL-Next	sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	elongation factor 1-	-	-	98%

Source	GOs	Term	Type	Identity
Blast2go	primary metabolic process	GO:0044238	Biological Process	98%
Blast2go	cellular metabolic process	GO:0044237	Biological Process	98%
Blast2go	binding	GO:0005488	Molecular Function	98%

Source	InterPros	Term	Type	Identity
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Translation elongation factor EF1A, eukaryotic/archaeal	IPR004539	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Translation elongation factor EFTu/EF1A, C-terminal	IPR004160	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWR1

Fln msg:

Fln protein: MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKRVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVSEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGTIVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASDSKNDPAKEAANFTAQVIIMNHPGQIGNGYAPVLDCHTCHIAVKFAEIMTKVDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKAVEKKEPSGAKVTKAAAKKK*

Protein Length: 449

Fln nts: GTATTTTTGTATGAACCGTCGGATTCGAGATCGGACGGCGATCCGAAACTGCAAGCGTCGGCCGTCGGATGCAGCATCGGACGGCAAAGAAGGAACCCTAAAACGCATTGCAACGTGCTTGGTGGGTGGAGGTTCTATGACCAGTATACGTCGTGACCTTGGCTGTCACGGGGCTCTTCATCTTGTGCGAGTCTCTCTGCTCTCTACGCCGCTGCGAAGCTGTTCTGTGGTGCTTCTGATTCTCCAGACTCAGGCAGCCGTGTTTGTAAGAGAATTTAGTTCATC_-_ATGGGAAAGGAGAAAACCCATATCAACATTGTGGTTATTGGCCATGTCGACTCCGGCAAGTCAACAACCACTGGGCATTTGATCTACAAGCTTGGAGGAATTGACAAGCGTGTGATTGAACGTTTTGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCTTGGGTTCTTGACAAGCTCAAGGCTGAACGTGAACGTGGTATCACAATTGATATTGCACTGTGGAAGTTTGAGACAACTAAATACTACTGCACTGTGATTGATGCCCCTGGCCATCGTGATTTCATCAAGAACATGATTACTGGAACATCTCAGGCTGACTGTGCAGTTTTGATCATCGACTCCACCACTGGAGGTTTTGAAGCTGGTATTTCCAAGGACGGTCAGACGAGAGAACATGCCCTATTGGCGTTCACCTTGGGAGTGAAGCAAATGATTTGCTGCTGTAACAAGATGGATGCCACTACTCCCAAGTACTCTAAGGCTCGTTATGATGAAATTGTTAAGGAAGTATCTTCTTATTTGAAGAGGGTTGGATACAACCCGGACAAGATTCCTTTTGTGCCCATCTCTGGTTTTGAGGGTGACAATATGATTGAGCGTTCTACCAACCTTGATTGGTACAAGGGTCCAACACTCTTGGAAGCTCTGGACCAGGTTTCAGAGCCAAAGCGTCCTTCAGACAAGCCTCTGAGGTTGCCTCTTCAGGATGTTTACAAGATTGGTGGTATTGGGACTGTGCCTGTTGGTCGTGTGGAAACTGGAGTCATAAAACCAGGTACGATTGTTACCTTTGGTCCCACTGGTCTGACAACTGAAGTTAAGTCTGTTGAAATGCATCATGAAGCTCTTCAGGAGGCATTGCCTGGTGACAATGTGGGATTCAATGTTAAGAATGTTGCTGTTAAGGATCTCAAGCGTGGTTATGTGGCATCTGATTCCAAGAATGATCCAGCAAAGGAAGCTGCCAACTTTACCGCACAGGTTATTATTATGAATCATCCAGGACAGATTGGAAATGGTTATGCCCCTGTGTTGGATTGTCACACTTGCCACATTGCCGTCAAGTTTGCTGAGATCATGACCAAGGTTGACAGGCGTTCTGGCAAGGAGCTGGAGAAGGAGCCCAAGTTTCTTAAGAATGGAGATGCTGGATTTGTTAAGATGATTCCAACCAAACCCATGGTTGTCGAAACTTTTGCAGAGTATCCTCCATTGGGTCGTTTTGCAGTCAGGGACATGCGTCAGACGGTTGCTGTAGGAGTCATCAAAGCTGTTGAAAAGAAGGAACCTAGTGGTGCAAAGGTTACCAAGGCAGCAGCCAAAAAGAAGTGA___ATGTTCCAGCAAAGTGATTGGGAATGGAGGATTGCGTGCTGCATTTCGTGTGCTTCCATGCTTATGCTTCACTATTTTCCCGATAGTATGTTAGTAGAGTTAGTTTTCCAAATGCAGAATTGGGTTCTTGATCGGCGGTGGCATAGGTTACATTATTTTCTAGTAAATACTTTTTAATGGTTACATTAGGCTAAAGTTGATTTAAGATTTCGTAGTTGCGGGGAAATCATGAGTTTGTCTGCACTGCAAGGAAATCTATGCAGTTGGATTGAGGGAGGATGGGCATTAATAATTTCTATTACTGGTTTACTGGTTTATTTTTAATGTTTGTATTGCCGTCCGTACATGACATTTTTCTCCGGATTGAGAAGACTTGGAATTTATATTAAAGCGCAGTTTTGAGGAGAAAATGTTTTTCTAATACTTTTAGATTGCTCGATGTTTTGTAGATCTATATTCTAGGCTCTGCGTTTTTACTTGCAATTGAATATCCGAAAAGTCCCTTGGTTGAGAATATGAAACTAGTCAGTCTCTACGCCAGGCACACTAGAAACCTTGGTTGTTGCTGGATGCGTGATATAGTTTGGCTTTTGGAGTTATGCTAGCTGTAAATGATTTTTTGCGGGCGCTTTGTTAATCCTCCCTCTAGTCACTGTTTTCAGGAGTGACAAGAAAATACTATTGTTTTTGTTCTACTATACGTTTGTCTTAGAAGGAGCTCCTGGTTTTGCCTGGTATAATTTAAGATGTCAGAAGTGGTTTTGATATTTGGTGTTTAGATTTGTGAAATGAAATAAGATATGCATTTATGGATTTATAG

Fln Alignment:

Contig16463___MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKRVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVSEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGTIVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASDSKNDPAKEAANFTAQVIIMNHPGQIGNGYAPVLDCHTCHIAVKFAEIMTKVDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKAVEKKEPSG
A9NWR1_______________MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETNKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKRVGYNPDKIPFVPISGFEGDNMIERSNNLDWYKGPTLLEALDQVSEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGTIVTFGPTGLTTEVKSVEMHHEALQEAYPGDNVGFNVKNVAVKDLKRGYVASDSKNDPAKEAANFTAQVIIMNHPGQIGNGYAPVLDCHTCHIAVKFSEIMTKVDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKAVEKKDPTG

SNPs (tot: 61)

Position	A %	C %	G %	T %	Probability
528		7	92		0.999664
530		92		7	0.999664
531	92			7	0.999664
569	75		16	8	0.99999
573		16		83	0.999991
575	72	9			0.999994
578	20			80	0.999996
584	77		22		0.999999
590		11		77	0.968132
591			88	11	0.923564
592	88	11			0.923564
593	11			88	0.923564
594			11	88	0.923564
601	77	22			0.999999
603	77		11	11	0.968132
606			14	85	0.993533
654		33		66	0.997452
846		11	88		0.923564
1040		20		80	0.995493
1069		80		20	0.995493
1070		80		20	0.995493
1138		1	98	0	0.998483
1140	98	0		1	0.99994
1164		1		98	1.0
1251	98		0		1.0
1468	98			1	0.999906
1483			97	2	0.999853
1507	2	97			0.999412
1511	2			97	0.999499
1515	2			97	0.907451
1517	2		97		0.914425
1525			97	2	0.960269
1529			97	2	0.971188
1563		23		76	1.0
1947		0		82	1.0
1969		98		0	0.99253
2010	1			98	0.978387
2011		1		98	0.979572
2021		96		2	0.995859
2027		2		97	0.997997
2030	3	0	93		1.0
2034	96			3	0.984346
2035	1	8	87	1	1.0
2037	85			14	1.0
2038	85	5		8	0.999999
2040	10	3		86	1.0
2041	7		92		0.999664
2042	4			88	0.999262
2048		8		91	0.999807
2054			8	91	0.999807
2056			8	91	0.999807
2059		9	90		0.999842
2060	90	9			0.999842
2064		73		26	1.0
2066		94	5		0.998894
2067			94	5	0.998894
2070		6	93		0.99903
2382			66	33	0.997452
2383	66			33	0.997452
2384	66	33			0.997452
2386		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain