SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16446

Length: 747 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene16446 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	glycine decarboxylase complex H-protein [Populus tremuloides]	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	glycine decarboxylase complex h-protein	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	ATP binding	GO:0005524	Molecular Function	0.0	82%
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	82%

Source	InterPros	Term	Type	Identity
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	Glycine cleavage H-protein	IPR002930	-	-
Sma3	Glycine cleavage H-protein, subgroup	IPR017453	-	-

Full-Lengther Next Prediction

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
372			12	87	0.999964
382	87		12		0.999964
395		85	14		0.999981
396	14	7		78	0.999974
397		7	78		0.999974
402		15	84		0.999986
403	15			84	0.999986
404	15			84	0.999986
405	84		15		0.999986
406			15	84	0.999986
410		15		84	0.999986
431		88	11		0.923564
434		88	11		0.923564
439	11			88	0.923564
440	88		11		0.923564
442	11		88		0.923564
443	22		77		0.999999
444		11	77		0.968132
445	11	88			0.923564
446	11			88	0.923564
447	11		11	77	0.968132
448	11	88			0.923564
449	11	88			0.923564
451	11	11		77	0.968132
452		11	11	77	0.968132
453	77		11	11	0.968132
454	87			12	0.992554
455		87	12		0.992554
456	12	87			0.992554
457	87	12			0.992554
458	87		12		0.992554
461		87	12		0.992554
465	85		14		0.993533
488		85	14		0.993533
490			14	85	0.993533
497		83	16		0.994512
498			16	83	0.994512
501	16	83			0.994512
503		83	16		0.994512
509	20	80			0.995493
514		80		20	0.995493
517		20	80		0.995493
519	75		25		0.996473
520		25		75	0.996473
521	75	25			0.996473
522	25	75			0.996473
530			25	75	0.996473
531	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain