SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16440

Length: 1792 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene16440 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	fructokinase 3 [Solanum lycopersicum]	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	fructokinase	-	-	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	0.0	87%

Source	InterPros	Term	Type	Identity
Sma3	Carbohydrate/purine kinase	IPR011611	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Ribokinase	IPR002139	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWX9

Fln msg:

Fln protein: MAMAAAVSASSASAFNRAGSSGFLEAKTINLSTSQFPSKGLYRSSFLSRVLEIKAQHKRNNFERPASGLIVKALSEDDNNGKPSEVSPLVVCFGELLIDFVPTVNGVSLADAPAFKKAPGGAPANVAVGIARLGGSSAFLGKVGEDEFGRMLVDILKENNVEHKGMRFDPDARTALAFVTLKADGEREFMFFRNPSADMLLTEAELDVDLIQQAKIFHYGSISLITDPCKSAHLAAMRIARDTGSLLSYDPNLRLPLWPSASEAREGILSIWDKADLIKVSEEEVGFLTGGADPFDDTVVRNLFHPNLKLLLVTEGQQGCRYYTKDFSGRVKGLAVEAVDTTGAGDAFVSGILSQLAKDFTLLQREEELREALKFANACGAITVTERGAIPALPTREAVLAALTKVLA*

Protein Length: 410

Fln nts: ATGGGGGCGTTCACCCCTTGCATCTCCGGCGAGGTAATAGTTGAATCGCGGACGCACGAGGCAAAAACCGGTGCAGGGAGCGAATCCGCGAAGGTCTGAGGGGGCAATTGGCCACATCGATTGAGAATAAATACTGCCCCCAACTTACTACACTTTTCAGACAATTCCCAGAGTTGTACTTGCCTGTTGCCAACTGTGTTTTTGGAATGAACAGAAGGATTTAGCCTAGACTGCCATATTTTTCGTCAAATTCCGTTCTATCCTACTACTACCACCGCCGACCAGATTTCATAAAGATCCGATCAGAAGAGA_-_ATGGCAATGGCTGCTGCAGTTTCTGCATCATCAGCTTCCGCATTCAATCGGGCCGGGTCCTCTGGATTTCTGGAGGCCAAGACTATCAATTTGTCAACTTCACAATTTCCGTCTAAGGGTCTTTACAGATCGTCGTTTCTGAGCAGAGTGCTGGAAATCAAGGCTCAACACAAAAGGAATAACTTCGAACGGCCGGCTTCAGGTTTAATAGTGAAAGCATTGAGTGAAGACGACAATAATGGGAAACCATCTGAGGTGTCCCCGCTAGTGGTGTGCTTTGGGGAATTGCTGATCGATTTTGTCCCAACGGTCAATGGAGTCTCATTGGCTGATGCTCCTGCATTCAAGAAAGCTCCAGGAGGAGCCCCTGCGAATGTTGCCGTTGGTATAGCAAGGCTCGGAGGTTCATCCGCATTTCTAGGGAAGGTTGGCGAAGATGAATTTGGGCGCATGCTTGTGGATATTCTGAAAGAAAATAATGTGGAGCACAAAGGGATGCGCTTTGATCCTGATGCTCGAACTGCTTTGGCTTTTGTCACATTGAAAGCCGATGGTGAACGAGAGTTTATGTTTTTCCGGAATCCCAGTGCTGATATGCTACTAACTGAAGCCGAGCTTGACGTGGACTTGATCCAACAGGCTAAAATTTTCCATTATGGATCAATTAGTCTGATCACAGACCCCTGTAAGTCTGCCCATTTGGCTGCCATGAGAATCGCTAGAGACACGGGCAGTTTACTGTCTTATGATCCCAATCTCAGATTGCCATTATGGCCATCAGCGAGCGAAGCTCGGGAGGGTATTTTAAGCATATGGGATAAAGCAGATTTAATTAAGGTTAGTGAAGAGGAAGTAGGATTTTTAACAGGAGGTGCAGATCCATTCGACGACACTGTTGTAAGAAACCTTTTCCATCCAAACCTCAAATTGCTTCTCGTGACTGAAGGCCAGCAAGGATGTAGATATTACACCAAGGATTTTAGCGGAAGAGTGAAAGGCCTGGCAGTGGAAGCTGTAGACACCACTGGTGCTGGAGATGCGTTTGTGAGTGGAATTCTTAGTCAATTGGCTAAGGACTTCACTTTATTGCAGAGAGAAGAGGAACTGAGAGAGGCATTGAAGTTTGCAAATGCCTGTGGTGCAATTACGGTTACTGAGAGGGGGGCAATCCCTGCTCTTCCCACGCGAGAAGCAGTCCTAGCAGCTCTGACAAAAGTTCTTGCCTAA___GCGTTTTATCTACATTTCTTTTTTGCATAGTTGGCAGCCTATAAAATACCCGTGGATGGTCCTGTGGATGGCGTTAGAGACGAGCTTGTGACACTCCCTATTGTAAAATTGGCTGCCTGTTTTGTGATCTTAGATATGAAACTTAGCAAATAAGCACTTTAACATTGTATTAAGGCGAACTCTTTTTATTTTTGCCTATTCGGGTGTCAAGAAATTTTGAGAAATTTAATCTATATATCTACTTCCATACATT

Fln Alignment:

Contig16440___GFLEAKTINLSTSQFPSKGLYRSSFLSRVLEIKAQHKRNNFERPASGLIVKALSEDDNNGKPSEVSPLVVCFGELLIDFVPTVNGVSLXXXXXXXXXXXXXXXXXXXXXARLGGSSAFLGKVGEDEFGRMLVDILKENNVEHKGMRFDPDARTALAFVTLKADGEREFMFFRNPSADMLLTEAELDVDLIQQAKIFHYGSISLITDPCKSAHLAAMRIARDTGSLLSYDPNLRLPLWPSASEAREGILSIWDKADLIKVSEEEVGFLTGGADPFDDTVVRNLFHPNLKLLLVTEGQQGCRYYTKDFSGRVKGLAVEAVDTTGAGDAFVSGILSQLAKDFTXXXXXXXXXXXLKFANACGAITVTERGAIPALPTRE
A9NWX9_______________GFLEAKAINLSTSQFSSKGLYRSSFLSRMPEIKSQHRRNAFKRPAPGLIPKALSESHDNGKPSEVSPLVVCFGEMLIDFVPTVSGVSLAEAPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGDDEFGYMLADIMKENNVEHRGMRFDPVARTALAFVTLKADGEREFMFFRNPSADMLLTESELEVDLIQQAKIFHYGSVSLITEPCRSAHLAAMRIAKDTGSFLSYDPNLRLPLWSSASAAREGMLSIWDEADVIKVSDEEVEFLTEGADPYDDTVARNLFHPNLKLLLVTEGDQGCRYYTKDFSGRVNGVAVQAVDTTGAGDAFVSGILSELAKDFNLLQEEKGLREALKFANACGAITVTERGAIPALPTRE

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
1279	12	87			0.992554
1280		87	12		0.992554
1289	12		87		0.992554
1290	12	87			0.992554
1291		87	12		0.992554
1294	12			87	0.992554
1298	87	12			0.992554
1430		35		64	1.0
1518		2	91		0.995208
1519		8	91		1.0
1520	2	5		91	0.995208
1521	5	2	91		0.995208
1522	5		88	2	0.985613
1526		6		93	0.999153
1636		33	66		1.0
1637	50	50			1.0
1638	50	50			1.0
1639	75	25			1.0
1640	83			16	0.999991
1641			72	9	0.999994
1643	12		87		0.992554
1649	71			28	1.0
1725		14	85		0.993533
1726		14	85		0.993533
1727		14		85	0.993533
1728		14		85	0.993533
1729	14			85	0.993533
1751	25	75			0.996473
1752	75	25			0.996473
1765	20	80			0.995493
1766		50	50		1.0
1769	20	20	60		0.99255
1770	25		50	25	0.995533
1772			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain