SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16418

Length: 1355 nt

Origin of reads: Inia v1 Biogeco1 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene16418 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pinoresinol-lariciresinol reductase TH2 n=2 Tax=Tsuga heterophylla RepID=Q9M520_TSUHE	-	-	67%
FL-Next	tr=Pinoresinol-lariciresinol reductase TH2; Tsuga heterophylla (Western hemlock) (Abies heterophylla).	-	-	67%
Blast2go	pinoresinol-lariciresinol reductase	-	-	80%

Source	InterPros	Term	Type	Identity
Sma3	Cecropin	IPR000875	-	-
Sma3	NmrA-like	IPR008030	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Cyclic nucleotide-binding, conserved site	IPR018488	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q9M520

Fln msg:

Fln protein: MAEGKDKARILIVGGTGYLGRRLVRASLALGHPTYVLARPEAIGIDIEKLQMLNSFQNAGAHLLQGSFDNHESLVAALKKVDIVICAMAGNHIRSHAILRQLKLVEAIKEAPNIKRFVPSEFGIDSGRMEHAMEPGNVTFIDKREVRRAIEAAGIPYTYVSANCFAGYFVGGLAQLGRVMPPADRVYIYGDGNTKVIWVDEDDIATYTINTVVDPRTLNKTLYIRPAANILSQTEVIQIWEKYTGKTLEKTYLSSDDFLKLMKGQSLAEQIGMTHFHHIFYEGCLYNFEIGEDGREATELYPNVQYTTVENYLYQFYLFINPLLIC*

Protein Length: 328

Fln nts: GAAACCTGTGATGGTGGAGCACCTTAGGTGGTCTTCGTATTATGGATTTACTATTTATTGATGAACCGTCAAATGGAAACGGCGGACTGTGAAGGCTTTGGTTCTGGATTCGAGAGCTTTGGTTATTACTGTTGTCATTG_-_ATGGCGGAGGGCAAGGACAAGGCCAGGATTCTGATCGTGGGAGGGACTGGATACCTGGGCAGAAGGCTCGTAAGGGCGAGCTTGGCCCTTGGTCATCCCACTTACGTTCTTGCTCGCCCCGAGGCCATTGGCATTGATATTGAAAAGCTCCAAATGCTCAATTCTTTCCAAAACGCTGGAGCACATCTTTTACAGGGGTCGTTTGATAATCATGAGAGCCTTGTAGCTGCTTTGAAGAAAGTTGATATTGTGATTTGTGCCATGGCTGGAAACCACATTCGCAGTCACGCAATTCTTCGGCAGCTGAAACTGGTGGAAGCCATTAAAGAAGCTCCCAACATCAAGAGATTTGTGCCATCTGAATTTGGCATAGATTCGGGCAGAATGGAACATGCAATGGAACCAGGAAATGTCACTTTTATTGACAAAAGAGAGGTCAGGCGCGCCATCGAAGCAGCAGGGATCCCGTATACATACGTATCTGCAAACTGTTTCGCAGGGTATTTCGTAGGGGGGTTGGCACAGCTTGGTCGTGTAATGCCCCCTGCAGATCGAGTTTACATCTATGGAGACGGGAATACCAAAGTTATTTGGGTGGACGAAGATGATATAGCAACTTATACAATAAATACCGTGGTCGATCCACGCACTCTGAACAAAACCCTCTACATTCGCCCTGCTGCTAACATTCTGTCTCAGACAGAGGTGATACAGATTTGGGAGAAATACACTGGAAAAACCTTAGAGAAAACATACCTGTCAAGCGATGATTTCTTGAAATTGATGAAAGGGCAGAGTTTAGCGGAACAGATTGGTATGACACATTTTCACCACATATTCTATGAGGGTTGCTTGTATAATTTTGAGATTGGAGAGGATGGAAGAGAAGCCACTGAGCTCTACCCAAATGTCCAATATACTACTGTTGAAAACTACCTTTATCAGTTTTATCTTTTTATAAATCCATTACTTATTTGTTAG___GTCTGAGGATGTGGTTCACAGTGGTTAGTTGGAGAGATTTGGTTTTACAGATATGTTTTGTTGTCTAATTTCAAACAAAACCATGTATGTCTAAGAGCTATTCATGCAAAATTTCTTGAACTGGAAAAAAAATCCCCTACCATGTAGGTAGGAGTGAGTAGTGAGTGTAACACCAGCTTTTTCCCGCGGAGAAATTTGATTTCCTGGAACTAATAATTGAACCCATAATCTTCC

Fln Alignment:

Contig16418___ARILIVGGTGYLGRRLVRASLALGHPTYVLARPEAIGIDIEKLQMLNSFQNAGAHLLQGSFDNHESLVAALKKVDIVICAMAGNHIRSHAILRQLKLVEAIKEAPNIKRFVPSEFGIDSGRMEHAMEPGNVTFIDKREVRRAIEAAGIPYTYVSANCFAGYFVGGLAQLGRVMPPADRVYIYGDGNTKVIWVDEDDIATYTINTVVDPRTLNKTLYIRPAANILSQTEVIQIWEKYTGKTLEKTYLSSDDFLKLMKGQSLAEQIGMTHFHHIFYEGCLYNFEIGEDGREATELYPNVQYTTVENYLYQF
Q9M520_______________SRVLIVGGTGYIGRKFVKASLALGHPTFVLSRPE-VGFDIEKVHMLLSFKQAGARLLEGSFEDFQSLVAALKQVDVVISAVAGNHFRN-LILQQLKLVEAIKEARNIKRFLPSEFGMDPDLMEHALEPGNAVFIDKRKVRRAIEAAGIPYTYVSSNIFAGYLAGGLAQIGRLMPPRDEVVIYGDGNVKAVWVDEDDVGIYTLKTIDDPRTLNKTVYIRPLKNILSQKELVAKWEKLSGKFLKKTYISAEDFLAGIEDQPYEHQVGISHFYQMFYSGDLYNFEIGPDGREATMLYPEVQYTTMDSYLKRY

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1197		8		91	0.999766
1262	10	90			0.90298
1268	14	14			0.984337
1271			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain