SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16297

Length: 842 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene16297 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative gibberellin-regulated protein [Arabidopsis thaliana] gb\|AAS47605.1\| At1g74670 [Arabidopsis thaliana] gb\|AEE35620.1\| putative gibberellin-regulated protein [Arabidopsis thaliana]	-	-	8.0e-33	60%
FL-Next	tr=Gasa5 like protein; Pinus pinaster (Maritime pine).	-	-	0.0	100%
Blast2go	gibberellin induced protein	-	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	response to sucrose stimulus	GO:0009744	Biological Process	80%
Blast2go	response to glucose stimulus	GO:0009749	Biological Process	80%
Blast2go	response to fructose stimulus	GO:0009750	Biological Process	80%
Blast2go	response to karrikin	GO:0080167	Biological Process	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Gibberellin regulated protein	IPR003854	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 49)

Position	A %	C %	G %	T %	Probability
355	91			8	0.999807
362	9			90	0.999842
363			9	90	0.999842
365		90		9	0.999842
368		9		90	0.999872
369			10	90	0.999898
371		10		90	0.999898
372			10	90	0.999898
383	88			11	0.999952
393	88		11		0.999952
395		11		82	0.999919
396	88		11		0.999952
398		5		82	0.999919
401	81	6			0.999943
403	6	12	12	68	0.999932
405	81	12	6		0.999943
406			31	68	1.0
407	12	87			0.999964
408	62	25		12	1.0
417	75		25		0.996473
526		2		93	0.970804
587	4	95			0.99692
588		95	4		0.99692
590		90	2		0.999997
594			3	96	0.993037
697	4		95		0.999991
720	95		4		0.999986
722	94		1		0.9999
726		4		95	0.999983
728	95		4		0.999984
729	95	4			0.999984
730	95	4			0.999984
731	4		95		0.999984
733		95	4		0.999986
736	4		95		0.999987
738		93	4		0.999936
740		4		93	0.999949
746	89		2		1.0
747		22		77	1.0
756		4		95	0.996252
759		4	95		0.996252
765		3		96	0.983282
766		3	96		0.983282
797	71	28			1.0
819	4	87	8		0.999414
820	12	87			1.0
822	19	57	4		1.0
823	76	9		14	1.0
824	5	10	5	78	0.999769

SSRs (tot: 1)

Start position	End position	Sequence	Length
273	285	ACTC ACTC ACTC A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain