SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16293

Length: 802 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene16293

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ethylene-responsive element binding factor-like protein (Fragment) n=3 Tax=Picea sitchensis RepID=E0ZDA4_PICSI	-	-	6.0e-34	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Blast2go	ethylene-responsive element binding factor-like protein	-	-	0.0	66%

Source	InterPros	Term	Type	Identity
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	Phospholipase C, phosphatidylinositol-specific, Y domain	IPR001711	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-

Full-Lengther Next Prediction

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
168		80		20	0.995493
172	20		80		0.995493
174		20		80	0.995493
175			80	20	0.995493
177		80	20		0.995493
178	80		20		0.995493
179	80	20			0.995493
180	80			20	0.995493
182	80			20	0.995493
183	80	20			0.995493
186		80		20	0.995493
309		14		85	0.993533
336	12	87			0.992554
340	87			12	0.992554
341	87			12	0.992554
342	87		12		0.992554
345			11	88	0.923564
346	77		11	11	0.968132
347	77	11		11	0.968132
348		11	88		0.923564
350		88		11	0.923564
351		77	11	11	0.968132
352	88	11			0.923564
353	88	11			0.923564
354		12		75	0.975346
357			12	87	0.992554
358			12	87	0.992554
390			85	14	0.993533
395		77	22		0.999999
396		77		22	0.999999
398	22	77			0.999999
399	77	22			0.999999
403			22	77	0.999999
404		77	22		0.999999
408		22	77		0.999999
457			61	38	1.0
568	10			90	0.90298
688	14			71	0.984337

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain