SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16276

Length: 1009 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene16276

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Class IV chitinase n=7 Tax=Pinaceae RepID=C3VP99_PSEMZ	-	-	76%
FL-Next	tr=Class IV chitinase; Pseudotsuga menziesii (Douglas-fir) (Abies menziesii).	-	-	81%
Blast2go	class iv chitinase	-	-	85%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Glycoside hydrolase, family 19, catalytic	IPR000726	-	-
Sma3	Chitin-binding, type 1	IPR001002	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Glycoside hydrolase, family 19	IPR016283	-	-
Sma3	Chitin-binding, type 1, conserved site	IPR018371	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C3VPA0

Fln msg:

Fln protein: MGVSCGTSVMSLVLVLLLVGVSVNAQNCGCASGLCCSKYGYCGTTSDYCGDGCRGGPCTGGGNVGTIISQSVFDGLAGGAASSCEGKGFYTYDAFIAAANAYSGFGTTGASDDQKRELAAFFANVMHETGGLCYINEINPPIIYCDATSTSWPCASGKSYHGRGPLQLSWNYNYGVAGQNIGFDGLNNPDVVGQDATISFKTAVWFWMQNCHSAITSGQGFGATIKAINSMECNGGNTPAVNSRVNYYNTICSQLGVDPGANVSC*

Protein Length: 267

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATAAACATATCAAACATTGAGTTTGAGCGCGGGATTCTTTAATAGAGAAAATTATTAGCT_-_ATGGGGGTTAGTTGTGGTACTTCGGTAATGTCTCTGGTGCTAGTGCTGCTCCTGGTGGGCGTTAGTGTTAATGCTCAAAACTGTGGCTGTGCCAGCGGTCTTTGTTGCAGCAAGTATGGATACTGCGGGACGACCTCCGACTACTGCGGCGATGGCTGCCGGGGCGGCCCCTGTACCGGAGGTGGGAACGTGGGCACCATAATTTCCCAGAGTGTCTTCGATGGCCTTGCGGGCGGAGCTGCCAGCTCCTGCGAAGGCAAAGGATTCTACACTTACGACGCTTTCATTGCAGCTGCCAATGCATATTCTGGATTTGGCACCACCGGTGCCAGCGACGACCAGAAGAGAGAGCTCGCTGCCTTCTTCGCTAATGTGATGCACGAAACTGGAGGGCTGTGCTACATCAACGAGATAAATCCTCCAATCATCTACTGTGATGCGACATCCACCTCCTGGCCGTGTGCGAGCGGGAAGAGCTACCATGGGCGCGGCCCTCTCCAGTTAAGCTGGAATTACAATTACGGAGTAGCTGGGCAGAACATAGGCTTCGACGGGCTGAACAACCCAGACGTGGTGGGGCAGGACGCCACCATCTCCTTCAAGACGGCCGTGTGGTTCTGGATGCAGAACTGTCATTCTGCCATAACCTCCGGGCAAGGCTTCGGCGCCACAATTAAAGCCATCAACAGCATGGAATGCAACGGTGGAAACACTCCTGCAGTGAACAGCAGAGTTAATTACTACAATACAATATGTAGCCAGTTGGGTGTGGATCCCGGAGCCAATGTCTCCTGCTAA___ATCTCTTTTCTCTTCATGGCTGCCAAATATATCGATAAAATGCCAAAGATGTCCATGGCTATCCACAAAATAAATTTTGCACCGCACCTCTCCTGCTGTGCATAACAAAGATGTCCATGGCTATCCA

Fln Alignment:

Contig16276___NAQNCGCASGLCCSKYGYCGTTSDYXXXXXXXXXXXXXXXXX---------TIISQSVFDGLAGGAASSCEGKGFYTYDAFIAAANAYSGFGTTGASDDQKRELAAFFANVMHETGGLCYINEINPPIIYCDATSTSWPCASGKSYHGRGPLQLSWNYNYGVAGQNIGFDGLNNPDVVGQDATISFKTAVWFWMQ--NCHSAITSGQGFGATIKAINSMECNGGNTPAVNSRVNYYNTICSQLGVDPGANVSC
C3VPA0_______________NAQNCGCASGLCCSKYGYCGTTSAYCGTGCQSGPCSSSSGGSPSGGGGSVGTIISESIFNGLAGGAASSCEGKGFYTYNAFIAAAGAYSGFGTTGSSDVQKRELAAFFANVMHETGGLCYINERNPPIIYCQSSST-WPCASGKSYHGRGPLQLSWNYNYGAAGQSIGFDGLNNPEKVGQDATISFKTAVWFWMKNSNCHSAITGGQGFGATIKAINSGECNGGNSGEVSSRVNYYNKICSQLGVDPGANASC

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
583		83		16	0.994512
584			16	83	0.994512
585		83	16		0.994512
587	83			16	0.994512
590		16		83	0.994512
597		16	83		0.994512
658			85	14	0.993533
660		14	85		0.993533
664	14		85		0.993533
665		14	85		0.993533
666		14	85		0.993533
667		85		14	0.993533
668	85			14	0.993533
671	85	14			0.993533
672		85		14	0.993533
674		85		14	0.993533
702		16	83		0.999991
703			16	83	0.999991
706			16	83	0.999991
707			83	16	0.999991
711		16	83		0.999991
713	83			16	0.999991
714			83	16	0.999991
715	83		16		0.999991
716	83		16		0.999991
723		16		83	0.999991
744	58		41		1.0
831		90		10	0.90298
952	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain