SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16259

Length: 982 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene16259

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1421 multi-domain protein	-	-	6.0e-09	25%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Blast2go	unknown [Picea sitchensis]	-	-	7.50104e-09	70%

Source	InterPros	Term	Type	Identity
Sma3	4Fe-4S binding domain	IPR001450	-	-
Sma3	Annexin	IPR001464	-	-
Sma3	XYPPX repeat	IPR006031	-	-
Sma3	4Fe-4S ferredoxin-type, iron-sulpur binding domain	IPR017896	-	-
Sma3	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	IPR017900	-	-

Full-Lengther Next Prediction

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
749	88			11	0.923564
751	11			88	0.923564
755			88	11	0.923564
762	87		12		0.992554
763			12	87	0.992554
764	12	87			0.992554
765		87		12	0.992554
802	25			75	0.996473
803			25	75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
316	333	GCAGCT GCAGCT GCAGCT	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain