SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16250

Length: 2352 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene16250
ATCACATCATATTCCTTTCACACAAGCACCTAGGAGAAGTAGTGGTTCTTCTCAAGGACAGGGCTTATCATCGTCTGTTTCCAGGCCTTCACAGGGTAGTCATTTTAATCCTTCTCGGAATATTCATTCCTCTTCATCATCAGATGTGCCTGTGCCACCAGTCACTGGTTTGCAAGTCCCACAATATCTTAGATCGGCGGCAGTATTGATGGAACGCCAGGGTGATGGGTTGGTAGGTGTACCATTTGGGTCGCTGCAAGCAATTGCTGCTGAAGGTGATGGACGCAACAGATTAATGACTGAGCAGATACGTAGTGTATTGGAGCTTGTGCGGAGCCGGAGAGGTGACAATCTGAGATTTGAGCCAAGGTTCCATCCATGCCAGCCTAGGATGTTCCGGGTAATGTCATCATGGTGGGCAAAGGGAAGCCCGTGTTCCATGACTTTCTTGGCATGAGCTTCCTCAGCAGCGAATCATGGGGTGCTACTGCTACAGCTAGACATGAGGAGGCCTCCAGGAGCACAGGCGTCGTAGACGGAATCGACCATGGATCTTCCTCAGCGGGCAGCAGGCTCCTCTCAGGGCATCTCGGTTTAGCAGTAGCAGCAGCTGCTCCTTGTTCTTCAGATCCAGGATCAGAGAGGATGTCGTGTGGAAAGTGGGAAGGCATACATGGCGGCATGGGTGCTTTGGACAGCAGCAGATCGGTAGCAGGAGGGAAGAAGAGGGAAACTTCCACTTCGAGCCTTCGAGAGTCCTTGCAGGATACTTCAGAGAGTTCGCGTGGAATTAAGATGTCAAGGTTTGAGTCCAAAGATGACAGAAGAGGAAGGCACCATGATGATGATGTTCTTCTGGGCATGCAACCACCAAGGCCAACAGCCACATGCCAAACATCAACGAGGCCATCAATGGGTGCGAATGCTGATTTTATGGCTTCAAAGAAATGGGAACGCCCAGCCTTTATGAATTCAGGATCAGCTGTATATAGTCCTTCACGTCTCACTCATCTTGGAAGCTATCAGAACAAGACCTCTGCAAATTTGTCCAGGGAAAATACGGTAGTGCCTGCTCTCGTTTCTCAGACCCCAGCAGATGAAGGTTCTCGAACAGGTCTTAAAGGTTCCAGTTTGGCAAACGTCATGAACAATGGTCCAAGTGCACCAGCTGCCAGAAACACAAGTGGGCAAAGTCTTTCTGCCGGTAGTTCAAAATTCTTGCCTGGGAATGGTGTTCAAGAATCCAGCATTCCAGCTAGCCCAAAATGTATAACATCAGCTAGTCGCCAGTTGACAATATTCTATGCTGGGCAAGCTCATGTTTTTGATGATATCCATCCTACGAAGGCAGATGCCATACTAACTTTAGCTGGATCAAATGGGCGGTCCTGGTCTACAACGTACTCAACGCGGCCAAGGTCTACATTACAATCACTTGCAACTGAAGGCAATGTTTTGTCTGTAGAGAGAGAAAAAGTTGGAAACAGGATGACTGTTAATAGTTCTACTGGTTTGGACATGCCCCTTGAGTTGCAAGCTCTGTTACCTGCTAGAACACATGCTGGTCAGGGAAACAGTCGCTTAGGTGGAAATGGACACAAGGATAGGACCTTGATGGCTTGTCCCTCCACCTGTAGCAATGAAGGAGACAAGGAGACCATTTGCAATAGTCAGCAGTTAGCGTGAACAACCGCAGATGATGACAATTATAGACTCTATGTTTTCTCACATAAGATGCTGTATCATACATGCAGGTTGAAACCAGTTTCATGACTTTCTTCCTGGTACCTGGCTGCAGAAAATTTTCTTTCCATTAACTTAATCAAAGCTGATGTCTTGTCTGCCTTTACCATTGAGGTACCCCCAGTGTACTGTATTTGGTAATGCAATAGCAACAACCTGTTACCTGCTGTGCAGCACATATTATTAAATCAAGGAATTTTGGTACTCTTGTGCAAATTATGAAAACTGCTTTGCCCTCGAGATTTCATAGAGTATTGATTTGTTGTGTGTTTGACCTATAGCTCATTACATTGTCATAGTTTTTCTTCTGGTATTGATAGATTTGGTTTTATGTGAGGGGTCCCTTGTCTCAAAATGAAGAAGCCACCACCATTTTCAGTTGGGTACATGAACTTGTTTTCATGTGGAAACAAGGCTTTCATGTTGATGCTTATTATATTGACAACACAATCTTAGATTTATGCATTTTGATCTGAAACAGAGGTGTATGTGTTATCACTGCCACCACATGTTCTTCCTGACTTCAGGGAACAAAATGTAGAATAAAACAGAAGGTTCAGGTAATAGGGGTCCCCTCGTGTTGAAGGTCATGCAGTTGTCTCAAATTGT

Ace file of the UniGene sp_v2.0_unigene16250 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein TIFY 8 [Arabidopsis thaliana] sp\|Q84MB2.1\|TIF8_ARATH RecName: Full=Protein TIFY 8 gb\|AAP21239.1\| At4g32570 [Arabidopsis thaliana] gb\|AEE86081.1\| protein TIFY 8 [Arabidopsis thaliana]	-	-	2.0e-18	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	protein	-	-	0.0	52%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	52%

Source	InterPros	Term	Type	e value	Identity
Sma3	Tify	IPR010399	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLX7

Fln msg:

Fln protein: MVGKGKPVFHDFLGMSFLSSESWGATATARHEEASRSTGVVDGIDHGSSSAGSRLLSGHLGLAVAAAAPCSSDPGSERMSCGKWEGIHGGMGALDSSRSVAGGKKRETSTSSLRESLQDTSESSRGIKMSRFESKDDRRGRHHDDDVLLGMQPPRPTATCQTSTRPSMGANADFMASKKWERPAFMNSGSAVYSPSRLTHLGSYQNKTSANLSRENTVVPALVSQTPADEGSRTGLKGSSLANVMNNGPSAPAARNTSGQSLSAGSSKFLPGNGVQESSIPASPKCITSASRQLTIFYAGQAHVFDDIHPTKADAILTLAGSNGRSWSTTYSTRPRSTLQSLATEGNVLSVEREKVGNRMTVNSSTGLDMPLELQALLPARTHAGQGNSRLGGNGHKDRTLMACPSTCSNEGDKETICNSQQLA*

Protein Length: 426

Fln nts: ATCACATCATATTCCTTTCACACAAGCACCTAGGAGAAGTAGTGGTTCTTCTCAAGGACAGGGCTTATCATCGTCTGTTTCCAGGCCTTCACAGGGTAGTCATTTTAATCCTTCTCGGAATATTCATTCCTCTTCATCATCAGATGTGCCTGTGCCACCAGTCACTGGTTTGCAAGTCCCACAATATCTTAGATCGGCGGCAGTATTGATGGAACGCCAGGGTGATGGGTTGGTAGGTGTACCATTTGGGTCGCTGCAAGCAATTGCTGCTGAAGGTGATGGACGCAACAGATTAATGACTGAGCAGATACGTAGTGTATTGGAGCTTGTGCGGAGCCGGAGAGGTGACAATCTGAGATTTGAGCCAAGGTTCCATCCATGCCAGCCTAGGATGTTCCGGGTAATGTCATC_-_ATGGTGGGCAAAGGGAAGCCCGTGTTCCATGACTTTCTTGGCATGAGCTTCCTCAGCAGCGAATCATGGGGTGCTACTGCTACAGCTAGACATGAGGAGGCCTCCAGGAGCACAGGCGTCGTAGACGGAATCGACCATGGATCTTCCTCAGCGGGCAGCAGGCTCCTCTCAGGGCATCTCGGTTTAGCAGTAGCAGCAGCTGCTCCTTGTTCTTCAGATCCAGGATCAGAGAGGATGTCGTGTGGAAAGTGGGAAGGCATACATGGCGGCATGGGTGCTTTGGACAGCAGCAGATCGGTAGCAGGAGGGAAGAAGAGGGAAACTTCCACTTCGAGCCTTCGAGAGTCCTTGCAGGATACTTCAGAGAGTTCGCGTGGAATTAAGATGTCAAGGTTTGAGTCCAAAGATGACAGAAGAGGAAGGCACCATGATGATGATGTTCTTCTGGGCATGCAACCACCAAGGCCAACAGCCACATGCCAAACATCAACGAGGCCATCAATGGGTGCGAATGCTGATTTTATGGCTTCAAAGAAATGGGAACGCCCAGCCTTTATGAATTCAGGATCAGCTGTATATAGTCCTTCACGTCTCACTCATCTTGGAAGCTATCAGAACAAGACCTCTGCAAATTTGTCCAGGGAAAATACGGTAGTGCCTGCTCTCGTTTCTCAGACCCCAGCAGATGAAGGTTCTCGAACAGGTCTTAAAGGTTCCAGTTTGGCAAACGTCATGAACAATGGTCCAAGTGCACCAGCTGCCAGAAACACAAGTGGGCAAAGTCTTTCTGCCGGTAGTTCAAAATTCTTGCCTGGGAATGGTGTTCAAGAATCCAGCATTCCAGCTAGCCCAAAATGTATAACATCAGCTAGTCGCCAGTTGACAATATTCTATGCTGGGCAAGCTCATGTTTTTGATGATATCCATCCTACGAAGGCAGATGCCATACTAACTTTAGCTGGATCAAATGGGCGGTCCTGGTCTACAACGTACTCAACGCGGCCAAGGTCTACATTACAATCACTTGCAACTGAAGGCAATGTTTTGTCTGTAGAGAGAGAAAAAGTTGGAAACAGGATGACTGTTAATAGTTCTACTGGTTTGGACATGCCCCTTGAGTTGCAAGCTCTGTTACCTGCTAGAACACATGCTGGTCAGGGAAACAGTCGCTTAGGTGGAAATGGACACAAGGATAGGACCTTGATGGCTTGTCCCTCCACCTGTAGCAATGAAGGAGACAAGGAGACCATTTGCAATAGTCAGCAGTTAGCGTGA___ACAACCGCAGATGATGACAATTATAGACTCTATGTTTTCTCACATAAGATGCTGTATCATACATGCAGGTTGAAACCAGTTTCATGACTTTCTTCCTGGTACCTGGCTGCAGAAAATTTTCTTTCCATTAACTTAATCAAAGCTGATGTCTTGTCTGCCTTTACCATTGAGGTACCCCCAGTGTACTGTATTTGGTAATGCAATAGCAACAACCTGTTACCTGCTGTGCAGCACATATTATTAAATCAAGGAATTTTGGTACTCTTGTGCAAATTATGAAAACTGCTTTGCCCTCGAGATTTCATAGAGTATTGATTTGTTGTGTGTTTGACCTATAGCTCATTACATTGTCATAGTTTTTCTTCTGGTATTGATAGATTTGGTTTTATGTGAGGGGTCCCTTGTCTCAAAATGAAGAAGCCACCACCATTTTCAGTTGGGTACATGAACTTGTTTTCATGTGGAAACAAGGCTTTCATGTTGATGCTTATTATATTGACAACACAATCTTAGATTTATGCATTTTGATCTGAAACAGAGGTGTATGTGTTATCACTGCCACCACATGTTCTTCCTGACTTCAGGGAACAAAATGTAGAATAAAACAGAAGGTTCAGGTAATAGGGGTCCCCTCGTGTTGAAGGTCATGCAGTTGTCTCAAATTGT

Fln Alignment:

Contig16250___MSFLSSESWGATATARHEEASRSTGVVDGIDXXXXXXXXXXXXXXXXXAVAAAAPCSSDPGSERMSCGKWEGIHGGMGALDSSRSVAGGKKRETSTSSLRESLQDTSESSRGIKMSRFESKXXXXXXXXXXDVLLGMQPPRPTATCQTSTRPSMGANADFMASKKWERPAFMNSGSAVYSPSRLTHLGSYQNKTSANLSRENTVVPALVSQTPADEGSRTGLKGSSLANVMNNGPSAPAARNTSGQSLSAGSSKFLPGNGVQESSIPASPKCITSASRQLTIFYAGQAHVFDDIHPTKADAILTLAGSNGRSWSTTYSTRPRSTLQSLATEGNVLSVEREKVGNRMT-VNSSTGLDMPLELQALLPARTHAGQGNSRLGGNGHKDRTLMACPSTCSNEGDKETICNSQQLA
B8LLX7_______________MSFPSSESWGATA--RHEEASRSTGVVDGIDHGSSSAGSRLLSGHLCL-AAAAAPCSSDP--ERMSCGKWEGIHGGMSALENNRSVGGGKKRETSTSSLRDSLQDTSESSRGIKMSRFESKDDRRGRQHDDDVLLGMQPPRPTATCQTLTRPSMGVNADFMASKKWERPVFMNTGSSVYSPSRLTHLGNYQNKTSANLSRENTVVPALVSQPPADEGSRTGLKGSSLANLLNNAPSATAARNTSGQSLSAGSSKFLPGNGVQESSIQASPKGIASASRQLTIFYAGQAHVFDDINPTKADDILALAGSNGRSWSTTYSPRPRSTLQSLATEGNVLSVEREKVGNRMTAINSSSGLDMSLELQALLPARTHAGQGNSRLGGNGHKDRPLMACPSTCSNEGDKETICNSQQLA

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
491	10		90		0.90298
642		92	7		0.999602
643	7			92	0.999602
645			7	92	0.999602
646	92	7			0.999602
647	92	7			0.999602
648	7			92	0.999602
649	10			89	1.0
654		7		92	0.999602
655		89	7	3	0.998862
657		7		92	0.999718
658		92	7		0.999718
736		94		5	0.985476
884		12		87	0.993502
886		14		85	0.993533
887	14	85			0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
1503	1514	CAT CAT CAT CAT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain