SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16248

Length: 898 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene16248

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Thaumatin-like protein S1 n=2 Tax=Pinus monticola RepID=D3IZ11_PINMO	-	-	92%
FL-Next	tr=Thaumatin-like protein S1; Pinus monticola (Western white pine) (Strobus monticola).	-	-	92%
Blast2go	thaumatin-like protein	-	-	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	0.0	-
Sma3	Thaumatin, conserved site	IPR017949	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
49		40	20	40	1.0
52		60		40	1.0
64		11		88	0.923564
490			33	66	0.997452
554	20		80		1.0
555		20		80	1.0
607			16	83	0.999991
692		81		18	0.999994
695		10		90	0.90298
715		20		80	0.999996
723		10		90	0.90298
741		82	17		1.0
762			17	82	1.0
766		17	82		1.0
774	73			26	1.0
777		13		86	0.999973
778		80		20	1.0
819	85			14	0.993533
821		14	85		0.993533
824			80	20	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain