SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16210

Length: 1594 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene16210

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Mitochondrial dicarboxylate carrier protein, putative n=1 Tax=Ricinus communis RepID=B9SXH6_RICCO	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	mitochondrial dicarboxylate carrier	-	-	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSC7

Fln msg:

Fln protein: MGVKGFLEGGIASVVAGCSTHPLDLIKVRMQLQGEQTVRPAFAFANVGAGYPVAELAHRNRVGPISVGIRVVQTEGVSALFSGVSATMLRQVLYSTTRMGLYEILKEKWREPGSKPGNLPLVKKIAAGLIAGGIGAAVGNPADVAMVRMQADGRLPVAQRRNYTSVGDAIGRMVRQEGVTSLWTGSSLTVQRAMIVTASQLASYDQIKETLISHGIMEDGVGTHVTASFSAGFVAAVASNPVDVIKTRIMNMNPKPGQPAPYSGALDCAMKTIKAEGPMALYKGFIPTVTRQGPFTVVLFVTLEQVRKIFKDLNF*

Protein Length: 317

Fln nts: CCTATTGTGGGCTAATTCCGCAGTTGAAGAGGTCTAGGTTTCGCTTTTCCAATTTGCAGGGCGCATCAACAACATCATTGACATTTCGTTAGCCGCGCTTAGAGAAGGATCGGATGTCCAGCCGGAGTCAATTTGTCCAGTGGTTTCACATTAATGGCGAACGCGTAACCTTTGAGGCATATATATAACCTATGTTGGGTTTCCTTTACATATAGAAATAAAGAGCAGAGAAGATGTCCATTGGTGTCTCAGAGGGACCAACAACATCCGCATCCTTGCTTAAGTGCCTTCGGCTTGCATTGCCATATACTGGCCTCGGCCTCCACTGAGATGAACCCCTGTTCTAATTGGTCTCTGTGATTCATCTTTCATTCCCCTATTTGCTTTCTTTATATAAACGAGGGGAGGAATTAGTTGGTAGAACCTGTGATTCTGCTGAGCGAGAGAGACTAGGAGTGCGGAAGAGGCTCCTTTTCTTGGGAGCTGAAGGGGTTCTTGTTCCAGAAAA_-_ATGGGCGTAAAGGGGTTTCTAGAAGGAGGGATTGCCTCGGTTGTCGCAGGATGTAGTACACATCCTCTGGATCTGATAAAGGTGCGCATGCAGCTACAAGGCGAGCAAACTGTTCGCCCCGCATTCGCCTTTGCCAATGTGGGCGCTGGTTACCCAGTGGCGGAATTAGCCCACCGGAATAGGGTGGGGCCAATCTCTGTGGGAATACGCGTGGTTCAGACAGAGGGGGTGTCTGCGCTCTTTTCCGGTGTGTCTGCAACCATGCTCCGACAGGTACTGTACTCGACCACTCGCATGGGTTTATACGAGATTCTGAAGGAGAAATGGCGAGAGCCGGGTTCGAAACCAGGGAACCTACCCCTTGTCAAGAAGATCGCCGCGGGTTTGATCGCTGGAGGCATCGGCGCCGCCGTGGGCAACCCCGCTGATGTAGCGATGGTGAGAATGCAAGCCGATGGGCGCCTCCCGGTTGCCCAGAGGCGCAACTACACGAGCGTTGGCGATGCCATCGGTCGCATGGTTCGACAGGAGGGTGTGACTTCACTGTGGACAGGGTCATCGTTGACCGTCCAGAGGGCCATGATCGTGACGGCCTCGCAGCTGGCCTCCTACGATCAGATCAAGGAGACCCTTATCTCCCACGGCATTATGGAAGACGGTGTGGGCACGCATGTGACAGCCAGCTTCAGTGCGGGGTTTGTGGCTGCCGTGGCTTCAAATCCCGTGGATGTCATCAAGACCCGGATCATGAATATGAACCCTAAACCAGGTCAGCCGGCACCTTATTCTGGAGCCCTTGACTGTGCAATGAAGACCATCAAAGCGGAAGGTCCTATGGCTCTTTACAAGGGGTTTATTCCCACCGTGACGAGACAAGGTCCCTTTACAGTAGTTCTTTTCGTTACTCTGGAGCAAGTCAGGAAGATTTTCAAGGACCTTAATTTTTAG___ATGTTATCATCTACCATTTATTTATTTATTATATAATTCTAGGTCTTCATTGTGGCCATCTATTTGCCTTTGTATTAACTATACTTTACTAATCAAAATTAAAATTAGGCGAATGACAAATTATATTGTCCTATTGAG

Fln Alignment:

Contig16210___MGVKGFLEGGIASVVAGCSTHPLDLIKVRMQLQGEQTVRPAFAFANVGAGYPVAELAHRNRVGPISVGIRVVQTEGVSALFSGVSATMLRQVLYSTTRMGLYEILKEKWREPGSKPGNLPLVKKXXXXXXXXXXXXXXXNPADVAMVRMQADGRLPVAQRRNYTSVGDAIGRMVRQEGVTSLWTGSSLTVQRAMIVTASQLASYDQIKETLISHGIMEDGVGTHVTXXXXXXXXXXXXXNPVDVIKTRIMNMNPKPGQPAPYSGALDCAMKTIKAEGPMALYKGFIPTVTRQGPFTVVLFVTLEQVRKIFKDLNF
C0PSC7_______________MGVKGFVEGGIASVVAGCSTHPLDLIKVRMQLQGEQNVRPAFAFANVGAGCPAAELAHQ-KVGPISVGIRVVQTEGVSALFSGVSATMLRQVLYSTTRMGLYEILKEKWREPGSKPGNLPLVKKIAAGLTAGGIGAAVGNPADVAMVRMQADGRLPVAQRRNYTSVADAIGRMVRQEGVTSLWTGSSLTVQRAMIVTASQLASYDQIKETIISRDIMKDGLGTHVTASFSAGFVAAVASNPVDVIKTRIMNMNPKPGQPAPYSGALDCAMKTIKAEGPMALYKGFIPTVTRQGPFTVVLFVTLEQVRKIFKDLNF

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
646			14	85	0.993533
694	85	14			0.993533
720	14	85			0.993533
754		14		85	0.993533
837	16		83		0.994512
873	75	25			0.996473
888		25		75	0.996473
930		33		66	0.997452
999		80		20	0.995493
1001	60			40	1.0
1156	14		85		0.993533
1431		25	75		0.996473
1449		25		75	0.996473
1474	50		50		1.0
1495		25		75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
1472	1486	ATTT ATTT ATTT ATT	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain