SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16209

Length: 1669 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene16209 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Adenylosuccinate synthetase 1, chloroplastic n=5 Tax=Poaceae RepID=PURA1_SORBI	-	-	64%
FL-Next	sp=Adenylosuccinate synthetase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	adenylosuccinate synthetase	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	Adenylosuccinate synthetase	IPR001114	-	-
Sma3	Exostosin-like	IPR004263	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	EGF, extracellular	IPR013111	-	-
Sma3	Adenylosuccinate synthase, active site	IPR018220	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8A1

Fln msg: Separated hits, possible frame ERROR between 811 and 816,

Fln protein: MREAELAGSLIGTTKRGIGPCYASKAIRNGxxxVSDLRHMDTFPEKLDILLHDAASRFNGFEYSKSMLQTEVEH*KRYSK*IEPYIADTVHLMNDAFSSGKKILVEGGQATMLDVGFRTYPFVASSNPSADGICIGLGIAPRHIGDMIGVAKAYTTRVGSGPYSTEFLDEAGEDLRSAGHEYGTTTGRPRRCG*LDLVALKYSCQIDGFSTLNLTKVDVLSGLSRIRLGVAYKGPDGNVLKSFPVDLDLLQKVEVIYEDLLG*QADISKVRSYQDLPSAACLYVERIESWNTNRLYWCWARP*

Protein Length: 304

Fln nts: ATGGGAGTTTCAGCCCCCTTTACCCCAGTTCCATTCTGGATTACCCTCCGAGAGAAAAAAAAGCTATCTGCCTGAACTGGATCATAGCTTCTGCTAGGGATTTGGGGTTTTGAAGGTTGCTCAATCCGCGGTCTGTGGGAATAAATGGCTTCTGCGCTGATTAGCGATCTCTGTGTTCCGAATTTGCACGGATTTTCGTAGGATAAGAAGAAGAGGTAGCAGGGGTTGCGGTCAGGGTTTGTGCATTCTGTGAACTTGCATTTGGCTAAAGGTCGAATTGTACTGCAGAGTAGAAGGATAAAATGCAAGCGTAGAGGAGGCCGACGCCATTGTTGAGGTAGAGAAAGCGGAAGATCCTTTTAAATCCCTGAGTCAAGTGGGTGCAGTGCTGGGAACTCAGTGGGGTGACGAAGGAAAGGGAAAGCTCGTTGACGTTTTAGCACAACGCTATGATATTGTGGCCCATTGTCAGGAAGGGGCAAACGCAGGTCACACCATAAACAATAGCGAGGGAAAGAAATTTGCTCTTCACCTTGTCCCTTCTGGAATAGTGAATGAGAAAGCCCTATGCGTTATTGGGAATGGAGCCGTTGTGCATCTTCCAAGACTATTTGAAGAGATAGACGAGCTTGAGTCTAATGGAGTTTCTTGCAAAGGAAGGCTGTTAATTTCTGAcaGTGCTCATTTACTATTTGATTTCCATCAAACTATTGATGGA_-_ATGAGAGAAGCAgAGCTTGCAGGGTCGTTAATTGGAACGACAAAAAGAGGGATTGGTCCTTGCTATGCAAGCAAGGCAATCCGGAATGGTATxxxxxxGGTAAGTGATTTGAGGCACATGGATACATTTCCTGAGAAGTTGGATATTCTTTTGCATGATGCCGCATCCCGTTTTAATGGCTTTGAGTATAGTAAAAGCATGTTACAGACTGAAGTGGAGCATTAGAAGAGATATTCTAAGTGAATAGAACCTTATATTGCTGACACTGTTCATTTGATGAATGATGCATTCTCAAGCGGGAAGAAGATTTTGGTTGAAGGCGGCCAGGCGACCATGTTAGATGTCGGTTTCAGAACTTATCCATTTGTAGCTTCTTCTAATCCATCTGCCGATGGAATCTGTATTGGACTTGGTATTGCTCCAAGACATATTGGTGATATGATTGGTGTGGCTAAAGCGTACACAACAAGAGTTGGTTCAGGTCCTTACTCGACAGAATTCTTGGATGAAGCGGGTGAAGATCTTCGATCAGCTGGACATGAATATGGCACCACAACTGGTCGGCCTCGTCGTTGTGGTTAGCTAGATCTGGTTGCACTTAAATATTCTTGTCAAATCGATGGTTTCTCAACACTTAATCTGACAAAGGTTGACGTACTTTCTGGGTTATCTCGAATTAGGCTTGGGGTAGCCTATAAAGGGCCTGATGGAAATGTGTTGAAATCTTTTCCTGTGGACCTTGACCTTCTGCAAAAAGTCGAGGTTATTTATGAAGATCTGCTTGGATGACAGGCTGATATATCTAAAGTGAGAAGCTATCAAGACTTACCATCTGCTGCTTGCCTCTATGTGGAAAGGATCGAGAGTTGGAATACCAATCGCTTATATTGGTGTTGGGCCAGGCCGTGA___TGCTTTAATAGTGAAGTAATAGGATCAACAGATTTCATTGTCAT

Fln Alignment:

Contig16209___MREAELAGSLIGTTKRGIGPCYASKAIRNGIxxVSDLRHMDTFPEKLDILLHDAASRFNGFEYSKSMLQTEVEH*KRYSK*IEPYIADTVHLMNDAFSSGKKILVEGGQATMLDVGFRTYPFVASSNPSADGICIGLGIAPRHIGDMIGVAKAYTTRVGSGPYSTEFLDEAGEDLRSAGHEYXXXXXXXXXXX*LDLVALKYSCQIDGFSTLNLTKVDVLSGLSRIRLGVAYKGPDGNVLKSFPVDLDLLQKVEVIYEDLLG*QADISKVRSYQDLPSAACLYVERIES
D5A8A1_______________MREAELAGSLIGTTKRGIGPCYASKVIRNGIxxVSDLRHMDTFPEKLDILLHDAASRFKGFEYSKSMLQTEVEHYKRYSERVEPYIAVTVHLMHDAFSSGKRILVEGGQATMLDVDFGTYPFVTSSNPSAGGICTGLGIAPRHIGDLIGVAKAYTTRVGSGPYPTELLDEAGENLRSAGYEYGTTTGRPRRCGWLDLVALKYSCQINGFSTLNLTKLDVLSGLSRIRLGVAYKGPDGNVLPSFPADLDLLQQVEVIYENLPGWQADISSVRRYQDLPSAACLYVERIES

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
645	66		33		0.997452
841	20		80		0.995493
843	20	80			0.995493
845		80		20	0.995493
859		25		75	0.996473
905		75		25	0.996473
939		75		25	0.996473
941	25	75			0.996473
995		25		75	0.996473
996	25		75		0.996473
1011		75		25	0.996473
1063	75	25			0.996473
1064		25	75		0.996473
1065		25		75	0.996473
1066	25	75			0.996473
1189	25		75		0.996473
1199		25		75	0.996473
1228		25		75	0.996473
1250	25			75	0.996473
1252			25	75	0.996473
1429	25		75		0.996473
1432		75		25	0.996473
1433	75			25	0.996473
1456	66		33		0.997452
1474	66		33		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain