SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16170

Length: 1988 nt

Origin of reads: Inia v1 Biogeco1 v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene16170
ATGGGGAACACATACATTCATATGAGCCATCTGCAAACTTGGTTGTTTGTTTGAGGTTTTGCTGCAGGTGAACATTAATATGGAAGGCCAAATTGCAGCATTAAGCAAAGAAGATGAGTTCATTTTTCACAGCCCTTTTCCTGCAGTATCTGTTCCAGAGAATATAAGTCTTCCCCAGTTTGTTCTGGAAGGTGCTGAGAAATACAGTGATAAGGTGGCCCTAGTGGAGGCCTCCACTGGCAAGGAGTACAACTATGGTCAGGTGATTTCGCTCACAAGGAATGTTGCAGCCGGGCTCGTAGACAAAGGCATTCAAAAGGGCGATGTGGTATTTGTTCTGCTTCCAAATATGGCAGAATACCCCATTATTGTGCTGGGAATAATGTTGGCCGGGGCAGTGTTTTCTGGGGCAAATCCTTCTGCACACATCAATGAAGTTGAAAAACATATCCAGGATTCTGGGGCAAAGATTGTTGTGACAGTTGGGTCTGCTTATGAGAAGGTGAGGCAAGTGAGACTGCCTGTTATTATTGCAGATAACGAACATATCATGAATACAATTCCATTGCAGGAAATCTTTGAGAGAAATTATGAAGCCGCAGGGCCTTTTGTACAAATTTGTCAGGATGATCTGTGTGCACTCCCTTATTCTTCTGGCACCACCGGGGCCTCAAAAGGTGTCATGCTCACTCACAGAAATCTGATTGCAAATCTGTCCTCTAGCTTGTTTGATGTCCATGAATCTCTTGTAGGAAGTTTCACCACGTTGGGGCTGATGCCATTATTTCACATATATGGCATCACGGGCATCTGTTGCGCCACTCTTCGCAACAGAGGCAAGGTCGTGGTCATGTCCAGATTCGATCTCCGACACTTTATCAGTTCTTTGATTACTTATGAGGTCAACTTCGCGCCTATTGTCCCGCCCATAATGCTCTCCCTCGTTAAAAATCCTATTGTTAACGAGTTCGATCTCAGCCTCTTGAAACTTAAAGCTGTCATGACTGCAGCTGCTCCACTGGCCCCGGATGTACTGCGAGCGTTCGAGGAAAAATTCCCTGGCGTTGAGGTTCAAGAGGCCTATGGTCTTACGGAACACAGTTGCATCACATTGACTCATTGCGCTCCCGGAAACATACGTGGGAGAGCCAAGAAGGGTTCGGTTGGTTTTATTATTCCCAATCTGGAGGTGAAGTTTATTGATCCTGAAACTGGAAAGTCATTGCCCAGGAATTCCATCGGGGAGGTGTGCGTCAGAAGCCAATGTGTCATGCGAGGGTATTACAAAAAACCGACAGAAACCGAGAAAACAGTGGACAGCGACGGCTGGCTGCATACTGGGGATGTCGGTTTCATAGATGACGACGACGACGTATTCATCGTCGACAGAATTAAAGAGCTGATCAAATACAAAGGTTTTCAGGTTGCTCCCGCAGAGCTGGAAGCCATTCTACTTTCTCATCCATCAGTGGAAGACGCAGCAGTGGTTCCTTTACCTGATGAGGAAGCAGGGGAGATTCCAGCGGCGTGCGTGGTGATGGCAGCCAGTGCTACGGAGACGGAGGACGACATTTCAAAGTTTGTGGCGTCGCAGGTGGCCACATACAAGAGGGTGAGACTGGTGAAGTTTGTGTCCACCATTCCTAAATCTTCTTCCGGAAAGATCCTTCGCAGACTTCTGCGAGATAATCTCTGTGAAACACTCAAAAACCAGCGCCAACCATTGTCCACTTAGGCTTTGCAGCGTTATATATAAATAAATCAAACGTTCTAGGGATGGGATTATAGCCCCATAACATACATTTTGAAATTACCAGAGCAAACTTGTCTAGTGTAGTTTGTTACAGGCACTCCTCGCCTTACTTTGAACATAATATATACAGATCTCAATACTGAGGTTCATTTTATTGCAGCAAGCGGTGCTGAACATTTTAATTGATTTCGATTCGCTTCGTATCGATGTTTCCAATATGTCGTTTTCCATTTAG

Ace file of the UniGene sp_v2.0_unigene16170

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	4-coumarate--CoA ligase-like 1 [Arabidopsis thaliana] sp\|Q9LQ12.1\|4CLL1_ARATH RecName: Full=4-coumarate--CoA ligase-like 1; AltName: Full=4-coumarate--CoA ligase isoform 10; Short=At4CL10 gb\|AAF75805.1\|AC011000_8 Strong similarity to 4-coumarate:CoA ligas	-	-	61%
FL-Next	tr=4-coumarate:CoA ligase; Pinus massoniana.	-	-	40%
Blast2go	acyl:coa ligase	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Long-chain-fatty-acid--CoA ligase.	EC:6.2.1.3	-	0.0	77%

Source	KEGGs	Term	Type	Identity
Blast2go	Fatty acid metabolism	00071		77%
Blast2go	Metabolic pathways	01100		77%
Blast2go	4-coumarate--CoA ligase.	EC:6.2.1.12	-	77%

Source	KEGGs	Term	Identity
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	77%
Blast2go	Phenylalanine metabolism	00360	77%
Blast2go	Phenylpropanoid biosynthesis	00940	77%
Blast2go	Biosynthesis of phenylpropanoids	01061	77%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	77%
Blast2go	Metabolic pathways	01100	77%
Blast2go	Biosynthesis of secondary metabolites	01110	77%

Source	GOs	Term	Type	Identity
Blast2go	fatty-acyl-CoA biosynthetic process	GO:0046949	Biological Process	77%
Blast2go	sporopollenin biosynthetic process	GO:0080110	Biological Process	77%
Blast2go	long-chain fatty acid-CoA ligase activity	GO:0004467	Molecular Function	77%
Blast2go	medium-chain fatty acid-CoA ligase activity	GO:0031956	Molecular Function	77%
Blast2go	4-coumarate-CoA ligase activity	GO:0016207	Molecular Function	77%
Blast2go	cytoplasm	GO:0005737	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	-
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C1KBY2

Fln msg:

Fln protein: MEGQIAALSKEDEFIFHSPFPAVSVPENISLPQFVLEGAEKYSDKVALVEASTGKEYNYGQVISLTRNVAAGLVDKGIQKGDVVFVLLPNMAEYPIIVLGIMLAGAVFSGANPSAHINEVEKHIQDSGAKIVVTVGSAYEKVRQVRLPVIIADNEHIMNTIPLQEIFERNYEAAGPFVQICQDDLCALPYSSGTTGASKGVMLTHRNLIANLSSSLFDVHESLVGSFTTLGLMPLFHIYGITGICCATLRNRGKVVVMSRFDLRHFISSLITYEVNFAPIVPPIMLSLVKNPIVNEFDLSLLKLKAVMTAAAPLAPDVLRAFEEKFPGVEVQEAYGLTEHSCITLTHCAPGNIRGRAKKGSVGFIIPNLEVKFIDPETGKSLPRNSIGEVCVRSQCVMRGYYKKPTETEKTVDSDGWLHTGDVGFIDDDDDVFIVDRIKELIKYKGFQVAPAELEAILLSHPSVEDAAVVPLPDEEAGEIPAACVVMAASATETEDDISKFVASQVATYKRVRLVKFVSTIPKSSSGKILRRLLRDNLCETLKNQRQPLST*

Protein Length: 553

Fln nts: ATGGGGAACACATACATTCATATGAGCCATCTGCAAACTTGGTTGTTTGTTTGAGGTTTTGCTGCAGGTGAACATTAAT_-_ATGGAAGGCCAAATTGCAGCATTAAGCAAAGAAGATGAGTTCATTTTTCACAGCCCTTTTCCTGCAGTATCTGTTCCAGAGAATATAAGTCTTCCCCAGTTTGTTCTGGAAGGTGCTGAGAAATACAGTGATAAGGTGGCCCTAGTGGAGGCCTCCACTGGCAAGGAGTACAACTATGGTCAGGTGATTTCGCTCACAAGGAATGTTGCAGCCGGGCTCGTAGACAAAGGCATTCAAAAGGGCGATGTGGTATTTGTTCTGCTTCCAAATATGGCAGAATACCCCATTATTGTGCTGGGAATAATGTTGGCCGGGGCAGTGTTTTCTGGGGCAAATCCTTCTGCACACATCAATGAAGTTGAAAAACATATCCAGGATTCTGGGGCAAAGATTGTTGTGACAGTTGGGTCTGCTTATGAGAAGGTGAGGCAAGTGAGACTGCCTGTTATTATTGCAGATAACGAACATATCATGAATACAATTCCATTGCAGGAAATCTTTGAGAGAAATTATGAAGCCGCAGGGCCTTTTGTACAAATTTGTCAGGATGATCTGTGTGCACTCCCTTATTCTTCTGGCACCACCGGGGCCTCAAAAGGTGTCATGCTCACTCACAGAAATCTGATTGCAAATCTGTCCTCTAGCTTGTTTGATGTCCATGAATCTCTTGTAGGAAGTTTCACCACGTTGGGGCTGATGCCATTATTTCACATATATGGCATCACGGGCATCTGTTGCGCCACTCTTCGCAACAGAGGCAAGGTCGTGGTCATGTCCAGATTCGATCTCCGACACTTTATCAGTTCTTTGATTACTTATGAGGTCAACTTCGCGCCTATTGTCCCGCCCATAATGCTCTCCCTCGTTAAAAATCCTATTGTTAACGAGTTCGATCTCAGCCTCTTGAAACTTAAAGCTGTCATGACTGCAGCTGCTCCACTGGCCCCGGATGTACTGCGAGCGTTCGAGGAAAAATTCCCTGGCGTTGAGGTTCAAGAGGCCTATGGTCTTACGGAACACAGTTGCATCACATTGACTCATTGCGCTCCCGGAAACATACGTGGGAGAGCCAAGAAGGGTTCGGTTGGTTTTATTATTCCCAATCTGGAGGTGAAGTTTATTGATCCTGAAACTGGAAAGTCATTGCCCAGGAATTCCATCGGGGAGGTGTGCGTCAGAAGCCAATGTGTCATGCGAGGGTATTACAAAAAACCGACAGAAACCGAGAAAACAGTGGACAGCGACGGCTGGCTGCATACTGGGGATGTCGGTTTCATAGATGACGACGACGACGTATTCATCGTCGACAGAATTAAAGAGCTGATCAAATACAAAGGTTTTCAGGTTGCTCCCGCAGAGCTGGAAGCCATTCTACTTTCTCATCCATCAGTGGAAGACGCAGCAGTGGTTCCTTTACCTGATGAGGAAGCAGGGGAGATTCCAGCGGCGTGCGTGGTGATGGCAGCCAGTGCTACGGAGACGGAGGACGACATTTCAAAGTTTGTGGCGTCGCAGGTGGCCACATACAAGAGGGTGAGACTGGTGAAGTTTGTGTCCACCATTCCTAAATCTTCTTCCGGAAAGATCCTTCGCAGACTTCTGCGAGATAATCTCTGTGAAACACTCAAAAACCAGCGCCAACCATTGTCCACTTAG___GCTTTGCAGCGTTATATATAAATAAATCAAACGTTCTAGGGATGGGATTATAGCCCCATAACATACATTTTGAAATTACCAGAGCAAACTTGTCTAGTGTAGTTTGTTACAGGCACTCCTCGCCTTACTTTGAACATAATATATACAGATCTCAATACTGAGGTTCATTTTATTGCAGCAAGCGGTGCTGAACATTTTAATTGATTTCGATTCGCTTCGTATCGATGTTTCCAATATGTCGTTTTCCATTTAG

Fln Alignment:

Contig16170___KEDEFIFHSPFPAVSVPENISLPQFVLEGAEKYSDKVALVEASTGKEYNYGQVISLTRNVAAGLVDKGIQKGDVVFVLLPNMAEYPIIVLGIMLAGAVFSGANPSAHINEVEKHIQDSGAKIVVTVGSAYEKVRQVR---LPVIIADNEHIMNTIPLQEIFERNYEAAGPFVQICQDDLCALPYSSGTTGASKGVMLTHRNLIANLSSSLFDVHESLV--GSFTTLGLMPLFHIYGITGICCATLRNRGKVVVMSRFDLRHFISSLITYEVNFAPIVPPIMLSLVKNPIVNEFDLSLLKLKAVMTAAAPLAPDVLRAFEEKFPGVEVQEAYGLTEHSCITLTHCAPGNIRGRAKKGSVGFIIPNLEVKFIDPETGKSLPRNSIGEVCVRSQCVMRGYYKKPTETEKTVDSDGWLHTXXXXXXXXXXXXXXXXRIKELIKYKGFQVAPAELEAILLSHPSVEDAAVVPLPDEEAGEIPAACVVMAASATETEDDISKFVASQVATYKRVRLVKFVSTIPKSSSGKILRRLLRDNL
C1KBY2_______________KKVEHLYRSKLPDIEISDHLPLHSYCFERVAEFADRPCLIDGATDRTYSFSEVELISRKVAAGLAKLGLQQGQVVMLLLPNCIEFAFVFMGASVRGAIVTTANPFYKPGEIAKQAKAAGARIIVTLAAYVEKLADLQSHDVLVITIDDAPKEGCQHISVLTEAD-ETQCPAVKIHPDDVVALPYSSGTTGLPKGVMLTHKGLVSSVAQQVDGENPNLYFHSEDVILCVLPLFHIYSLNSVLLCALRAGAATLIMQKFNLTTCLELIQKYKVTVAPIVPPIVLDITKSPIVSQYDVSSVRI--IMSGAAPLGKELEDALRERFPKAIFGQGYGMTEAGPVLAMNLAFAKNPFPVKSGSCGTVVRNAQIKILDTETGESLPHNQAGEICIRGPEIMKGYINDPESTAATIDEEGWLHTGDVGYIDDDEEIFIVDRVKEIIKYKGFQVAPAELEALLVAHPSIADAAVVPQKHEETGEVPVAFVVKSSEISEQE--IKEFVAKQVVFYKKIHRVYFVDAIPKSPSGKILRKDLRSRL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1664	97		2		0.914425
1807			96	4	0.999968
1876	97		2		0.951554
1889	15			85	1.0
1890	15	85			1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1361	1373	GAC GAC GAC GAC G	13

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain