SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16161

Length: 933 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene16161

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Germin-like protein 2 n=1 Tax=Vitis vinifera RepID=Q0MYQ7_VITVI	-	-	58%
FL-Next	sp=Germin-like protein 5-1; Oryza sativa subsp. japonica (Rice).	-	-	58%
Blast2go	rhicadhesin receptor precursor	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	73%
Blast2go	cell wall	GO:0005618	Cellular Component	73%
Blast2go	nucleus	GO:0005634	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Germin	IPR001929	-	-
Sma3	5-formyltetrahydrofolate cyclo-ligase	IPR002698	-	-
Sma3	Cupin 1	IPR006045	-	-
Sma3	Fatty acid hydroxylase	IPR006694	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-
Sma3	Germin, manganese binding site	IPR019780	-	-

Full-Lengther Next Prediction

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
51		25		75	0.996473
69		25		75	0.996473
118	25		75		0.996473
181	75		25		0.996473
260		16		83	0.994512
361	20		80		0.995493
373	60			40	1.0
811		25	75		0.996473
834	50			25	0.995533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain