SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16124

Length: 1142 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene16124 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HVA22-like protein k [Arabidopsis thaliana] sp\|Q6NLY8.1\|HA22K_ARATH RecName: Full=HVA22-like protein k; Short=AtHVA22k gb\|AAS76284.1\| At4g36720 [Arabidopsis thaliana] gb\|AEE86693.1\| HVA22-like protein k [Arabidopsis thaliana]	-	-	5.99756e-43	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	hva22-like protein k-like	-	-	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	TB2/DP1/HVA22-related protein	IPR004345	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0N9

Fln msg:

Fln protein: MALLSSSVAGEVGLRLLLSPVVSNVVVRTACCSVGICFPVYSTFKAIESKNKKDQDQWLIYWAVYGSFSIVEVFPDKLLSWFPFYYHAKLAFLIWLQLPASCGSRHLYMKYLRPFLLKHQERLDQIASGTSCEINRLLLRHQPEIQFVKVAFQKSFVTVYQILQDMVRPSQPSTSDAPRGITRDAIGETETDSE*

Protein Length: 196

Fln nts: CGTCATGGGGTAGGCGGTACCACATGTATGAAGTAAACCCCCAAAGTTGCAGTTTTAACCGATCAAATTGCAGGATCAGGGCTTTGCGAGAGATCGGCCATTGTGGAAGTGGTGCAAGGATTCATTACTGCAATCTCCATTTTGTTCAGTCAAATGATATGATTTTGATCTAGTCTTTTCCGGAGAACCCTCGGCCAATT_-_ATGGCGCTTCTCAGCTCGTCTGTTGCCGGAGAGGTTGGGTTGCGCCTGTTGTTGAGTCCTGTTGTTTCTAATGTTGTAGTTCGAACAGCATGCTGCTCTGTAGGGATTTGTTTTCCGGTGTACTCTACTTTTAAGGCTATTGAGAGCAAAAATAAGAAGGACCAAGATCAATGGCTGATTTACTGGGCAGTTTACGGGAGTTTCAGCATTGTGGAAGTTTTTCCTGACAAGCTTCTCTCTTGGTTTCCTTTCTATTACCATGCGAAACTTGCATTCCTAATTTGGCTTCAGCTTCCAGCTAGTTGTGGTTCGAGACATTTATACATGAAATACTTGCGTCCATTTCTCTTGAAACATCAAGAAAGACTGGATCAAATTGCAAGTGGAACCTCCTGTGAAATAAATAGATTGTTGTTAAGGCATCAACCTGAAATCCAGTTTGTGAAGGTTGCATTCCAAAAGAGTTTTGTGACAGTTTATCAAATTCTACAAGATATGGTTCGACCATCACAGCCTTCAACAAGTGATGCACCTCGTGGTATTACAAGGGATGCCATTGGAGAAACAGAGACAGATTCTGAGTGA___GTGTAGATGAGATTTTCACAACTAATTCCATATATGTTGTCACAAAGACACTGATTTTGTTCATCTGTATAGTAGGGCAACAAATTTAGGGATTAGTTCTATTGAAGTCGTTTTGATTGGTGTCAAATGATAAGATGAACTCATCCAGCAAAGACTGGTATCATTAGAATTTCATCAATTCGTAAGTAGGTACTCTTTACCTTTAATCGTCCATGATTGATGGAAGGCCATGAAATTGCAGATTCATTTGTATGGTGGTTTAACCCTTGTTATATAGATTCTTATATTGTTTTAACTTTTACATCTTTTATTTCTAATAATTACTTAATGACCAGGTTTGTTCTTTTGTTGAAAGTT

Fln Alignment:

Contig16124___MALLSSSVAGEVGXXXXXXXXXXXXXXRTACCSVGICFPVYSTFKAIESKNKKDQDQWLIYWAVYGSFSIVEVFPDKLLSWFPFYYHAKLAFLIWLQLPASCGSRHLYMKYLRPFLLKHQERLDQIASGTSCEINRLLLRHQPEIQFVKVAFQKSFVTVYQILQDMVRPSQPSTSDAPRGITRDAIGETETDSE
A9P0N9_______________MALLSSSIAGEVGLRLLLSPVVSNVVVRTACCSVGICFPVYSTFKAIESKNKKDQDQWLIYWAVYGSFSIVEVFPDKLLSWFPLYYHAKLAFLIWLQLPASCGSRHLYMKYLRPFLLKHQQRLDQIAGGTSSEINRLLLRHQSEIQFVKVAFQKSFVTVYQILQDMVRPSQPSTSDAPRCITRDAIEETETDSD

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
995		22		77	1.0
1027		10		89	0.999919
1041	88	11			0.999937
1058	85	14			0.999981
1059	85	14			0.999981
1109	88	11			0.923564
1111		22		77	0.999999
1112		11		77	0.968132
1125	16	16	16		0.988986
1128	16	83			0.994512
1131	16	83			0.994512
1132	16			33	1.0
1133	50			50	1.0
1134		80	20		0.995493
1135		80	20		0.995493
1136		80		20	0.995493
1140		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain