SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene16111

Length: 740 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene16111

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA-directed RNA polymerase II 8.2 kDa polypeptide, putative [Musa balbisiana]	-	-	2.0e-33	95%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Blast2go	dna-directed rna polymerase ii kda polypeptide	-	-	4.62428e-44	97%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	4.62428e-44	97%
Blast2go	DNA-directed RNA polymerase IV complex	GO:0000418	Cellular Component	4.62428e-44	97%
Blast2go		GO:0080137	Cellular Component	4.62428e-44	97%
Blast2go	DNA-directed RNA polymerase II, core complex	GO:0005665	Cellular Component	4.62428e-44	97%

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR012287	-	0.0	-
Sma3	RNA polymerase, subunit N/RPB10	IPR000268	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
61		33		66	0.997452
116	33		66		1.0
220	6		93		0.989189
221		6	93		0.989189
224		6	86		0.94281
225	6		93		0.989189
226	6			93	0.989189
227			93	6	0.989189
230	93		6		0.989189
231		6		93	0.989189
232	93	6			0.989189
245		26		73	1.0
314	90			9	0.90298
315	90			10	0.991528
317		10	10	80	0.967733
318		10		90	0.991528
319	90			10	0.991528
320	90		10		0.991528
324	87	12			0.993502
325	87			12	0.993502
343		9		90	0.90298
344		9	90		0.90298
345			90	9	0.90298
346			90	9	0.90298
347	90		9		0.90298
349		9	90		0.90298
355	9			90	0.90298
357	90			9	0.90298
358		8		91	0.90298
680		50		50	1.0
707	90	10			0.90298
721		20	80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain